Table 3 List of individual somatic variant callers embedded in NeoMutate
From: NeoMutate: an ensemble machine learning framework for the prediction of somatic mutations in cancer
Tool | Version | Methodology |
|---|---|---|
MuTect2 | 3.8 | Bayesian classifier |
Strelka2 | 2.8.4 | Bayesian model of admixture |
VarScan2 | 2.4.3 | Heuristic methodology with statistical test |
VarDict | 1.4 | Combined heuristic and statistical algorithm |
SomaticSniper | 1.0.5.0 | Bayesian approach for estimating genotype probabilities |
Freebayes | 0.1.2 | Bayesian model with error probabilities |
Lancet | 1.0.5 | Colored de Bruijn graphs |