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Table 4 Comparison of GENT2 and other databases

From: GENT2: an updated gene expression database for normal and tumor tissues

Database

Data Type

Expression profiling

Cancer Subtype profiling

Meta-survival Analysis

REF

Analysis Type

Cancer Type

The number of samples

GENT2

Microarray

Aggregated

36

68,140

O

O

[1]

Oncopression

Microarray

Aggregated

20

19,000

X

X

[12]

CellLineNavigator

Microarray

Aggregated

28

317

X

X

[13]

MERAV

Microarray

Aggregated

27

4454

X

X

[14]

Oncomine

Microarray RNA-sequencing

Each

20

86,733

Various

X

[15]

cBioPortal

Microarray RNA-sequencing

Each

33

19,360

Various

X

[16]

RNA Seq Atlas

Microarray, RNA-sequencing

Aggregated

16

113

X

X

[17]

KM-Express

RNA-sequencing

Each

32

360

Various

X

[18]

BioXpress

RNA-sequencing

Each

23

6361

X

X

[19]

TiGER

expressed sequence tags

Aggregated

30

13,573

X

X

[20]

  1. Aggregated; aggregated data presented
  2. Each; each dataset presented