Skip to main content

Table 5 The results of basal-like type specific regulatory modules obtained by CONFIGURE

From: CONFIGURE: A pipeline for identifying context specific regulatory modules from gene expression data and its application to breast cancer

Regulatory Module Target Gene FIS Status Evidence
POU5F1(-) TOX3 0.1328 down-regulated [38, 39]
  RALGPS2    
  FUT8    
  HMGCR    
  FOXA1    
ZIC1(-) XBP1 0.1072 down-regulated  
  OVOL1    
  SLC1A4    
  SMAD7    
  CNTN1    
RARA(+) RARA 0.0827 down-regulated  
  STARD3    
  PLEKHH3    
  MAG    
  PCGF2    
E2F3(+) E2F3 0.0667 up-regulated  
  ANP32E    
  GEN1    
  SYNCRIP    
  BEND3    
GATA6(-) MAST4 0.058 down-regulated [40]
  PDE6B    
  ROBO2    
  KIF5A    
  ABI2    
PHOX2B(+) PHOX2B 0.0454 up-regulated  
  DDC    
  MSGN1    
  AKR1D1    
  FABP7    
GLI3(-) PPIF 0.0447 up-regulated [41]
  ELF5    
  ORAI1    
  POR    
  HMGA1    
ETV6(+) PHB2 0.0346 up-regulated  
  NCAPD2    
  VANGL2    
  PLEKHA5    
  ETV6    
SRF(-) PAIP2 0.0344 down-regulated [37, 42]
  ERLEC1    
  NECAP1    
  SCRN3    
  ZFP62    
PLAGL1(-) SLC25A17 0.0327 down-regulated  
  NPBWR2    
  PTK6    
  SYCE2    
  HN1L