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Table 7 Meta-Analysis Results for Testing the Rare Variants Effects on Diastolic Blood Pressure

From: Meta-Qtest: meta-analysis of quadratic test for rare variants

Meta-Analysis

GENE

Method

Test type

DTYMK (CHR 2)

CABIN1 (CHR 22)

PCCA (CHR 13)

meta Q tests

Het-meta-Q1

8.87E-01

5.95E-01

1.59E-01

Het-meta-Q2

1.21E-06

8.67E-06

1.92E-04

Het-meta-Q3

1.17E-06

6.91E-06

7.92E-05

meta SKAT

Hom-meta-SKAT

1.06E-01

3.93E-03

8.63E-06

Het-meta-SKAT

1.43E-02

4.97E-03

8.11E-06

Hom-meta-SKAT-O

1.40E-01

7.74E-03-

3.18E-06

Het-meta-SKAT-O

2.42E-02

1.03E-02

3.76E-06

Other methods

Meta-burden

1.51E-01

5.09E-01

4.78E-01

Fisher’s method (Q3)

NA

1.65E-05

1.05E-04

Score method (Q3)

NA

1.50E-05

1.33E-02

  1. GWAS significant level is α = 4.75E-06
  2. The minimum p value in each gene among the meta methods is marked in bold
  3. Fisher’s method and Z-score method used p values of optimal version of QTest, QTest3
  4. NA denotes that p value is not calculated because of very low valued statistics