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Table 1 Characteristics of NCBI GEO datasets used for WGCNA analysis

From: Integrative genomic and transcriptomic analysis of genetic markers in Dupuytren’s disease

 

GEO series ID

Array type

Array platform

No. of arrays (DD: Control)

Source of tissue

PMID

1

GSE2688 (GSE4457)

Two-color

Stanford Microarray

11 (4: 7)

DD tissues

18694919 [6], 16473681 [7]

2

GSE21221

One-color

GE Healthcare CodeLink Human Whole Genome Bioarray

12 (6: 6)

Fibroblasts derived from DD tissues

18433489 [40]

3

GSE31356

One-color

Affymetrix Human Genome U133A Array

6 (3: 3)

DD tissues

22965824 [8]

4

GSE41524

One-color

Affymetrix Human Exon 1.0 ST Array

10 (4: 6)

Fibroblasts derived from DD tissues

23554969 [9]

5

GSE59746

One-color

Affymetrix Human Genome U133 Plus 2.0 Array

4 (2: 2)

DD tissues

25379672 [10]

6

GSE75152

One-color

Illumina HumanWG-6 v3.0 expression beadchip

24 (12: 12)

DD tissues

27467239 [11]