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Table 2 Overlapsa Between Gene Expression Datasets Derived from Diseased Allograft Kidney & HKG Defined in This Study

From: Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue

Reference #Biopsies #of DE transcripts Biopsy Diagnosis Normalization method Used to Define HKG
TC (%) UQ (%) Median (%) Quantile (%) TMM (%) DESeq (%) TPM (%) RPKM (%) Lib_siz (%)
[25] 703 453 ABMR 2(0.40) 2(0.44) 2(0.44) 2(0.44) 1(0.22) 2(0.44) 2(0.44) 8(1.77) 1(0.22)
[26] 708 82 TCMR 0(0) 0(0) 0(0) 0(0) 0(0) 0(0) 0(0) 0(0) 0(0)
[27] 168 206 BKVN 3(1.46) 5(2.43) 3(1.46) 3(1.46) 3(1.46) 3(1.46) 3(1.46) 3(1.46) 3(1.46)
[28] 204 82 Chronic allograft damage 1(1.22) 1(1.22) 2(2.44) 2(2.44) 1(1.22) 1(1.22) 2(2.44) 1(1.22) 2(2.44)
  1. Abbreviations: ABMR antibody mediated rejection, DE differentially expressed, TCMR T-cell mediated rejection, BKVN polyomavirus nephropathy, For other abbreviations, see legend to Table 1
  2. aThe total number of overlapping genes with the specified datasets is enumerated