Table 4 Housekeeping Genes (n = 42) Common to All Normalization Methods
Entrez Gene ID | Transcripts | Entrez Gene Name | Molecular function |
|---|---|---|---|
51,433 | ANAPC5 | anaphase promoting complex subunit 5 | protein phosphatase binding |
25,906 | ANAPC15 | anaphase promoting complex subunit 15 | anaphase-promoting complex |
10,620 | ARID3B | AT-rich interaction domain 3B | transcription regulator |
285,598 | ARL10 | ADP ribosylation factor like GTPase 10 | small GTPase mediated signal transduction |
6311 | ATXN2 | ataxin 2 | epidermal growth factor receptor binding |
57,020 | C16orf62 | chromosome 16 open reading frame 62 | protein binding |
132,200 | C3orf49 | chromosome 3 open reading frame 49 | unknown |
55,749 | CCAR1 | cell division cycle and apoptosis regulator 1 | core promoter binding |
202,243 | CCDC125 | coiled-coil domain containing 125 | regulation of cell motility |
60,492 | CCDC90B | coiled-coil domain containing 90B | protein binding |
55,743 | CHFR | checkpoint with forkhead and ring finger domains | E3 ubiquitin-protein ligase |
207,063 | DHRSX | dehydrogenase/reductase X-linked | oxidoreductase activity |
83,786 | FRMD8 | FERM domain containing 8 | protein binding |
26,088 | GGA1 | golgi associated, gamma adaptin ear containing, ARF binding protein 1 | cellular protein metabolic process |
26,091 | HERC4 | HECT and RLD domain containing E3 ubiquitin protein ligase 4 | transferase activity; ubiquitin-protein ligase activity |
8569 | MKNK1 | MAP kinase interacting serine/threonine kinase 1 | ATP binding; calcium-dependent protein serine/threonine kinase activity |
4678 | NASP | nuclear autoantigenic sperm protein | histone binding; Hsp90 protein binding; |
4833 | NME4 | NME/NM23 nucleoside diphosphate kinase 4 | ubiquitous enzymes |
55,611 | OTUB1 | OTU deubiquitinase, ubiquitin aldehyde binding 1 | NEDD8-specific protease activity |
11,243|100,527,963 | PMF1/PMF1-BGLAP | polyamine modulated factor 1 | leucine zipper domain binding |
5431 | POLR2B | RNA polymerase II subunit B | chromatin binding |
11,128 | POLR3A | RNA polymerase III subunit A | chromatin binding |
84,197 | POMK | protein-O-mannose kinase | ATP binding; carbohydrate kinase activity |
379,025 | PSMA3-AS1 | PSMA3 antisense RNA 1 | unknown |
5784 | PTPN14 | protein tyrosine phosphatase, non-receptor type 14 | hydrolase activity; phosphatase activity |
51,735 | RAPGEF6 | Rap guanine nucleotide exchange factor 6 | GTP-dependent protein binding |
5966 | REL | REL proto-oncogene, NF-kB subunit | chromatin binding; DNA binding |
8568 | RRP1 | ribosomal RNA processing 1 | RNA binding |
146,923 | RUNDC1 | RUN domain containing 1 | GTPase activator activity; Rab GTPase binding |
55,095 | SAMD4B | sterile alpha motif domain containing 4B | mRNA binding; |
22,950 | SLC4A1AP | solute carrier family 4 member 1 adaptor protein | mRNA binding; protein binding |
7871 | SLMAP | sarcolemma associated protein | protein binding |
50,485 | SMARCAL1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 | ATP binding; DNA-dependent ATPase activity |
9342 | SNAP29 | synaptosome associated protein 29 | protein binding; SNAP receptor activity |
23,020 | SNRNP200 | small nuclear ribonucleoprotein U5 subunit 200 | ATP binding; ATP-dependent helicase activity |
6827 | SUPT4H1 | SPT4 homolog, DSIF elongation factor subunit | metal ion binding; protein binding |
25,771 | TBC1D22A | TBC1 domain family member 22A | 14–3-3 protein binding; GTPase activator activity |
440,944 | THUMPD3-AS1 | THUMPD3 antisense RNA 1 | unknown |
100,506,779 | TSPOAP1-AS1 | TSPOAP1 antisense RNA 1 | unknown |
10,844 | TUBGCP2 | tubulin gamma complex associated protein 2 | gamma-tubulin binding |
23,038 | WDTC1 | WD and tetratricopeptide repeats 1 | enzyme inhibitor activity |
27,300 | ZNF544 | zinc finger protein 544 | DNA binding; metal ion binding |