Skip to main content

Table 4 Housekeeping Genes (n = 42) Common to All Normalization Methods

From: Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue

Entrez Gene ID Transcripts Entrez Gene Name Molecular function
51,433 ANAPC5 anaphase promoting complex subunit 5 protein phosphatase binding
25,906 ANAPC15 anaphase promoting complex subunit 15 anaphase-promoting complex
10,620 ARID3B AT-rich interaction domain 3B transcription regulator
285,598 ARL10 ADP ribosylation factor like GTPase 10 small GTPase mediated signal transduction
6311 ATXN2 ataxin 2 epidermal growth factor receptor binding
57,020 C16orf62 chromosome 16 open reading frame 62 protein binding
132,200 C3orf49 chromosome 3 open reading frame 49 unknown
55,749 CCAR1 cell division cycle and apoptosis regulator 1 core promoter binding
202,243 CCDC125 coiled-coil domain containing 125 regulation of cell motility
60,492 CCDC90B coiled-coil domain containing 90B protein binding
55,743 CHFR checkpoint with forkhead and ring finger domains E3 ubiquitin-protein ligase
207,063 DHRSX dehydrogenase/reductase X-linked oxidoreductase activity
83,786 FRMD8 FERM domain containing 8 protein binding
26,088 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 cellular protein metabolic process
26,091 HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 transferase activity; ubiquitin-protein ligase activity
8569 MKNK1 MAP kinase interacting serine/threonine kinase 1 ATP binding; calcium-dependent protein serine/threonine kinase activity
4678 NASP nuclear autoantigenic sperm protein histone binding; Hsp90 protein binding;
4833 NME4 NME/NM23 nucleoside diphosphate kinase 4 ubiquitous enzymes
55,611 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 NEDD8-specific protease activity
11,243|100,527,963 PMF1/PMF1-BGLAP polyamine modulated factor 1 leucine zipper domain binding
5431 POLR2B RNA polymerase II subunit B chromatin binding
11,128 POLR3A RNA polymerase III subunit A chromatin binding
84,197 POMK protein-O-mannose kinase ATP binding; carbohydrate kinase activity
379,025 PSMA3-AS1 PSMA3 antisense RNA 1 unknown
5784 PTPN14 protein tyrosine phosphatase, non-receptor type 14 hydrolase activity; phosphatase activity
51,735 RAPGEF6 Rap guanine nucleotide exchange factor 6 GTP-dependent protein binding
5966 REL REL proto-oncogene, NF-kB subunit chromatin binding; DNA binding
8568 RRP1 ribosomal RNA processing 1 RNA binding
146,923 RUNDC1 RUN domain containing 1 GTPase activator activity; Rab GTPase binding
55,095 SAMD4B sterile alpha motif domain containing 4B mRNA binding;
22,950 SLC4A1AP solute carrier family 4 member 1 adaptor protein mRNA binding; protein binding
7871 SLMAP sarcolemma associated protein protein binding
50,485 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 ATP binding; DNA-dependent ATPase activity
9342 SNAP29 synaptosome associated protein 29 protein binding; SNAP receptor activity
23,020 SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 ATP binding; ATP-dependent helicase activity
6827 SUPT4H1 SPT4 homolog, DSIF elongation factor subunit metal ion binding; protein binding
25,771 TBC1D22A TBC1 domain family member 22A 14–3-3 protein binding; GTPase activator activity
440,944 THUMPD3-AS1 THUMPD3 antisense RNA 1 unknown
100,506,779 TSPOAP1-AS1 TSPOAP1 antisense RNA 1 unknown
10,844 TUBGCP2 tubulin gamma complex associated protein 2 gamma-tubulin binding
23,038 WDTC1 WD and tetratricopeptide repeats 1 enzyme inhibitor activity
27,300 ZNF544 zinc finger protein 544 DNA binding; metal ion binding