Table 1 Prevalence (proportion) of LGL patients and individuals from the five super-populations represented in the KGP data carrying a polymorphic HERV-K provirus
From: Retrovirus insertion site analysis of LGL leukemia patient genomes
HERV-K (hg19 coordinate) | LGL | ELGL | KGP | AFR | AMR | EAS | EUR | SAS |
|---|---|---|---|---|---|---|---|---|
chr1:75842771–75,849,143 | 70.6 | 70.0 | 42.9 | 26.8 | 56.5 | 6.0 | 68.9 | 66.8 |
chr3:148281477–148,285,396 | 49.0 | 52.5 | 41.9 | 38.9 | 42.6 | 45.0 | 46.5 | 37.4 |
chr12: 58721242–58,730,698 | 94.1 | 97.5 | 70.7 | 58.9 | 78.4 | 60.0 | 87.3 | 75.5 |
chr19: 21841536–21,841,542 | 5.9 | 7.5 | 27.0 | 39.2 | 11.9 | 32.2 | 10.7 | 32.4 |
chr19:22414379–22,414,380 | 51.0 | 47.5 | 67.8 | 89.2 | 60.8 | 56.9 | 55.8 | 67.2 |