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Table 2 Empirical runtime of seven methods in evaluating association of 209,911 transcription start sites with cancer

From: Directional association test reveals high-quality putative cancer driver biomarkers including noncoding RNAs

Methods

Runtime

t-test

2m 26s

Pearson’s chi-squared test

8m 32s

FunChisq

8m 40s

Wilcoxon test

8m 41s

edgeR

43m 44s

Logistic regression

44m 01s

DESeq2

54h 08m

  1. The methods are sorted in the increasing order of runtime
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BMC Medical Genomics

ISSN: 1755-8794

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