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Table 1 Sample sizes for contrasts performed

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Analysis Group A Group B Sample size # DE genes Genes detected
(1) HD BA9 C BA9 26 vs 56 7789 32490
(2) HD+ BA9 C BA9 3 vs 9 229 35843
(3) HD+ CAU HD+ BA9 2 vs 3 1199 34084
(4) HD+ CAU C CAU 2 vs 2 74 35554
(5) GTEx BA9 GTEx CAU 90 vs 102 23778 34081
  1. First number corresponds to number of samples for column sample type, e.g. for analysis (1) there were 26 HD BA9 and 56 C BA9. The number of DE genes reported have FDR <0.05. *BA9 control samples that matched the age at death were chosen from the whole control set for this analysis