Skip to main content

Table 1 Sample sizes for contrasts performed

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Analysis

Group A

Group B

Sample size

# DE genes

Genes detected

(1)

HD BA9

C BA9

26 vs 56

7789

32490

(2)

HD+ BA9

C BA9

3 vs 9

229

35843

(3)

HD+ CAU

HD+ BA9

2 vs 3

1199

34084

(4)

HD+ CAU

C CAU

2 vs 2

74

35554

(5)

GTEx BA9

GTEx CAU

90 vs 102

23778

34081

  1. First number corresponds to number of samples for column sample type, e.g. for analysis (1) there were 26 HD BA9 and 56 C BA9. The number of DE genes reported have FDR <0.05. *BA9 control samples that matched the age at death were chosen from the whole control set for this analysis
Back to article page

BMC Medical Genomics

ISSN: 1755-8794

Contact us