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Table 11 Putative early response genes in HD+ BA9 from Fig. 5 quadrant II

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Ensembl ID Gene name (1) Basemean (1) L2FC (2) Basemean (2) L2FC
ENSG00000125740 FOSB 363.46 -0.17 1438.94 3.63
ENSG00000174576 NPAS4 165.91 -1.27 2473.17 7.64
ENSG00000278050 NEAT1_2 2.51 -2.29 14.4 4.57
ENSG00000135625 EGR4 263.89 -0.48 832.95 3.35
ENSG00000173391 OLR1 229.69 -0.05 566.64 2.62
ENSG00000198576 ARC 897.43 -0.51 2278.26 2.54
ENSG00000158050 DUSP2 308.83 -0.28 850.53 2.54
ENSG00000153234 NR4A2 519.76 -0.18 1049.01 2.21
ENSG00000120738 EGR1 1826.3 -0.64 3887.13 2.06
ENSG00000248713 RP11-766F14.2 31.18 -0.37 71.78 1.96
ENSG00000160223 ICOSLG 796.19 -0.36 813.93 2.03
ENSG00000232352 SEMA3B-AS1 30.91 -0.27 33.01 1.67
ENSG00000174429 ABRA 14.35 -0.11 35.74 2.78
ENSG00000273186 RP11-339B21.10 9.21 -0.46 10.63 2.95
ENSG00000122877 EGR2 136.81 -0.27 366.35 2.72
ENSG00000123358 NR4A1 1771.51 -0.19 4397.13 2.52
ENSG00000162783 IER5 1079.98 -0.02 2118.33 2.0
ENSG00000105722 ERF 968.7 -0.05 1248.28 1.01
ENSG00000244062 RP11-404G16.2 31.01 -0.13 52.64 3.11
ENSG00000184378 ACTRT3 37.62 -0.05 81.25 1.9
  1. Base mean columns are the mean normalized counts from the corresponding analysis. L2FC is log 2 fold change estimated by DESeq2