Skip to main content

Table 11 Putative early response genes in HD+ BA9 from Fig. 5 quadrant II

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Ensembl ID

Gene name

(1) Basemean

(1) L2FC

(2) Basemean

(2) L2FC

ENSG00000125740

FOSB

363.46

-0.17

1438.94

3.63

ENSG00000174576

NPAS4

165.91

-1.27

2473.17

7.64

ENSG00000278050

NEAT1_2

2.51

-2.29

14.4

4.57

ENSG00000135625

EGR4

263.89

-0.48

832.95

3.35

ENSG00000173391

OLR1

229.69

-0.05

566.64

2.62

ENSG00000198576

ARC

897.43

-0.51

2278.26

2.54

ENSG00000158050

DUSP2

308.83

-0.28

850.53

2.54

ENSG00000153234

NR4A2

519.76

-0.18

1049.01

2.21

ENSG00000120738

EGR1

1826.3

-0.64

3887.13

2.06

ENSG00000248713

RP11-766F14.2

31.18

-0.37

71.78

1.96

ENSG00000160223

ICOSLG

796.19

-0.36

813.93

2.03

ENSG00000232352

SEMA3B-AS1

30.91

-0.27

33.01

1.67

ENSG00000174429

ABRA

14.35

-0.11

35.74

2.78

ENSG00000273186

RP11-339B21.10

9.21

-0.46

10.63

2.95

ENSG00000122877

EGR2

136.81

-0.27

366.35

2.72

ENSG00000123358

NR4A1

1771.51

-0.19

4397.13

2.52

ENSG00000162783

IER5

1079.98

-0.02

2118.33

2.0

ENSG00000105722

ERF

968.7

-0.05

1248.28

1.01

ENSG00000244062

RP11-404G16.2

31.01

-0.13

52.64

3.11

ENSG00000184378

ACTRT3

37.62

-0.05

81.25

1.9

  1. Base mean columns are the mean normalized counts from the corresponding analysis. L2FC is log 2 fold change estimated by DESeq2