Skip to main content

Table 12 Putative early response genes in HD+ BA9 from Fig. 5 quadrant IV

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Ensembl ID

Gene name

(1) Basemean

(1) L2FC

(2) Basemean

(2) L2FC

ENSG00000258017

RP11-386G11.10

7775.65

0.25

3679.44

-8.64

ENSG00000176868

RP11-334J6.7

2651.11

0.43

1455.75

-10.47

ENSG00000255082

GRM5-AS1

2209.09

0.19

1407.72

-6.19

ENSG00000254873

RP11-770J1.5

980.14

0.18

620.42

-7.46

ENSG00000267469

AC005944.2

2028.65

0.43

1058.48

-9.89

ENSG00000269604

AC005523.2

1008.72

0.06

565.69

-11.78

ENSG00000272379

RP1-257A7.5

697.88

0.47

385.27

-7.77

ENSG00000225339

RP11-513I15.6

5979.33

0.11

3352.43

-6.56

ENSG00000265401

RP11-138I1.4

4353.79

0.23

2305.67

-5.75

ENSG00000232940

HCG25

272.52

0.42

137.87

-3.5

ENSG00000271127

LL22NC03-N64E9.1

26.44

0.34

22.19

-4.43

ENSG00000273489

RP11-180C16.1

1300.83

0.5

737.27

-6.13

ENSG00000228748

RP13-39P12.3

301.31

0.44

190.55

-2.79

ENSG00000233427

RP1-212P9.3

28.1

0.75

13.53

-5.25

ENSG00000269145

AC007192.6

761.47

0.3

390.97

-11.38

ENSG00000279753

AC011558.5

15.79

1.07

6.54

-5.88

ENSG00000261641

LA16c-390E6.5

296.63

0.99

132.13

-9.85

ENSG00000268220

RP11-379K17.12

505.97

0.33

317.65

-8.97

ENSG00000269243

CTD-2231E14.8

214.65

0.15

109.74

-6.07

ENSG00000267436

AC005786.7

95.9

0.24

43.6

-8.07

ENSG00000279767

AL513523.2

642.42

0.46

288.95

-10.33

ENSG00000258430

RP11-982M15.2

210.57

0.47

103.36

-9.17

ENSG00000219410

RP4-761J14.8

363.25

0.36

195.65

-4.79

ENSG00000120992

LYPLA1

625.77

0.1

563.93

-1.49

ENSG00000256341

RP11-21A7A.3

23.56

0.21

15.33

-4.01

ENSG00000249141

RP11-514O12.4

Na

Na

4.87

5.35

ENSG00000279909

AC110615.1

Na

Na

187.8

-10.4

  1. Base mean columns are the mean normalized counts from the corresponding analysis. L2FC is log 2 fold change estimated by DESeq2