Skip to main content

Table 12 Putative early response genes in HD+ BA9 from Fig. 5 quadrant IV

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

Ensembl ID Gene name (1) Basemean (1) L2FC (2) Basemean (2) L2FC
ENSG00000258017 RP11-386G11.10 7775.65 0.25 3679.44 -8.64
ENSG00000176868 RP11-334J6.7 2651.11 0.43 1455.75 -10.47
ENSG00000255082 GRM5-AS1 2209.09 0.19 1407.72 -6.19
ENSG00000254873 RP11-770J1.5 980.14 0.18 620.42 -7.46
ENSG00000267469 AC005944.2 2028.65 0.43 1058.48 -9.89
ENSG00000269604 AC005523.2 1008.72 0.06 565.69 -11.78
ENSG00000272379 RP1-257A7.5 697.88 0.47 385.27 -7.77
ENSG00000225339 RP11-513I15.6 5979.33 0.11 3352.43 -6.56
ENSG00000265401 RP11-138I1.4 4353.79 0.23 2305.67 -5.75
ENSG00000232940 HCG25 272.52 0.42 137.87 -3.5
ENSG00000271127 LL22NC03-N64E9.1 26.44 0.34 22.19 -4.43
ENSG00000273489 RP11-180C16.1 1300.83 0.5 737.27 -6.13
ENSG00000228748 RP13-39P12.3 301.31 0.44 190.55 -2.79
ENSG00000233427 RP1-212P9.3 28.1 0.75 13.53 -5.25
ENSG00000269145 AC007192.6 761.47 0.3 390.97 -11.38
ENSG00000279753 AC011558.5 15.79 1.07 6.54 -5.88
ENSG00000261641 LA16c-390E6.5 296.63 0.99 132.13 -9.85
ENSG00000268220 RP11-379K17.12 505.97 0.33 317.65 -8.97
ENSG00000269243 CTD-2231E14.8 214.65 0.15 109.74 -6.07
ENSG00000267436 AC005786.7 95.9 0.24 43.6 -8.07
ENSG00000279767 AL513523.2 642.42 0.46 288.95 -10.33
ENSG00000258430 RP11-982M15.2 210.57 0.47 103.36 -9.17
ENSG00000219410 RP4-761J14.8 363.25 0.36 195.65 -4.79
ENSG00000120992 LYPLA1 625.77 0.1 563.93 -1.49
ENSG00000256341 RP11-21A7A.3 23.56 0.21 15.33 -4.01
ENSG00000249141 RP11-514O12.4 Na Na 4.87 5.35
ENSG00000279909 AC110615.1 Na Na 187.8 -10.4
  1. Base mean columns are the mean normalized counts from the corresponding analysis. L2FC is log 2 fold change estimated by DESeq2