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Table 8 Random forest decision tree classifications of HD+ using genes from (1)

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

(a) Trees built with top 250 DE genes from (1)   
Top HD BA9 Control BA9
HD+ BA9 0.354 0.646
HD+ CAU 1 0
(b) Trees built with 250 random genes from (1)   
Random HD BA9 Control BA9
HD+ BA9 0.318 0.682
HD+ CAU 0.940 0.060
(c) Trees built with 250 random genes from (1) and shuffled labels   
Null HD BA9 Control BA9
HD+ BA9 0.485 0.515
HD+ CAU 0.464 0.536
  1. All figures are the fraction of 20,000 trees that predicted each sample to have the corresponding label indicated in the column. E.g. 49.5% of the trees predicted HD+ BA9 samples to be HD BA9