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Table 8 Random forest decision tree classifications of HD+ using genes from (1)

From: The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain

(a) Trees built with top 250 DE genes from (1)

  

Top

HD BA9

Control BA9

HD+ BA9

0.354

0.646

HD+ CAU

1

0

(b) Trees built with 250 random genes from (1)

  

Random

HD BA9

Control BA9

HD+ BA9

0.318

0.682

HD+ CAU

0.940

0.060

(c) Trees built with 250 random genes from (1) and shuffled labels

  

Null

HD BA9

Control BA9

HD+ BA9

0.485

0.515

HD+ CAU

0.464

0.536

  1. All figures are the fraction of 20,000 trees that predicted each sample to have the corresponding label indicated in the column. E.g. 49.5% of the trees predicted HD+ BA9 samples to be HD BA9