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Table 3 CTCF binding sites present in IA-associated linkage disequilibrium blocks for endothelial cells and monocytesa

From: Epigenetic landscapes suggest that genetic risk for intracranial aneurysm operates on the endothelium

LD Block

SNP

HUVEC

M0

chr1:22160723–22,168,310

rs3767137

Y

Y

chr2:189841613–189,867,882

rs1800255

N

N

chr2:198148191–198,223,121

rs1429412

Y

Y

chr2:198541398–198,631,714

rs700651

Y

Y

chr4:148365339–148,414,651

rs6841581

N

N

chr5:82805424–82,826,254

rs251124

Y

Y

chr7:15493884–15,506,529

rs4628172

N

N

chr7:22766246–22,771,738

rs1800796

Y

Y

chr7:94043239–94,049,356

rs42524

N

N

chr8:55309731–55,328,116

rs10958409

Y

N

chr8:55421614–55,462,324

rs9298506

Y

N

chr9:22072264–22,125,503

rs2891168

N

N

chr9:22077085–22,125,503

rs10757278

Y

Y

chr12:95489131–95,516,843

rs6538595

N

N

chr14:95078677–95,080,803

rs4934

Y

N

chr20:17594030–17,600,114

rs1132274

Y

Y

  1. a “Y” indicates CTCF binding site for given cell type was present within that LD block. Data were unavailable for neutrophils and peripheral blood mononuclear cells. Abbreviations: CTCF CCCTC binding factor site, LD Linkage disequilibrium, chr Chromosome, rs Reference SNP cluster ID, SNP Single nucleotide polymorphism, Y Yes, N No, HUVEC Human umbilical vein endothelial cell, M0 Monocyte