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Table 2 DMG on X chromosome

From: Whole-genome bisulfite sequencing in systemic sclerosis provides novel targets to understand disease pathogenesis

Gene

Coordinates of DMR (GRCh37)

FDR

Averaged difference

Annotation

FTSJ1

[48,334,723, 48,334,739]

0.014

−0.23¶

5’UTR; Exon

MIR4770

[6,303,169, 6,303,169] §

0.015

−0.37

Upstream 1-5 kb

PQBP1

[48,755,311, 48,755,329]

0.016

0.23

Promoter; 5’UTR; Exon; Intron

FIRRE

[130,880,912, 130,880,927]

0.021

−0.25

Intron

PCDH19

[99,663,316, 99,663,316] §

0.027

−0.34

Exon

MECP2

[153,362,114, 153,362,135]

0.027

0.23

Intron

MIR363

[133,306,880, 133,306,910]

0.028

0.23

Upstream 1-5 kb

H2BFWT

[103,267,866, 103,267,866] §

0.029

0.34

Exon

TIMM8A

[100,603,892, 100,603,909]

0.030

0.23

5’UTR; Exon; Intron-Exon Boundary

HTR2C

[113,818,760, 113,818,778]

0.035

0.21

5’UTR; Exon

TENM1

[123,994,369, 123,994,369] §

0.044

−0.32

Intron

DCAF12L2

[125,300,434, 125,300,434] §

0.046

−0.32

Promoter

  1. ¶ Negative value indicates hypomethylation in SSc
  2. § Single-dinucleotide DMRs were labelled by coordinates of the first C/G sites