Table 4 Comparison for p-values of common pathways found by PMN and WGCNA
From: A new method for mining information of co-expression network based on multi-cancers integrated data
GeneSet | PMN | WGCNA | ||
|---|---|---|---|---|
P-value | FDR | P-value | FDR | |
Signaling by Rho GTPases(R) | 2.31E-14 | 4.39E-12 | 0.7673 | 0.7673 |
Cell adhesion molecules (CAMs)(K) | 1.66E-07 | 8.96E-06 | 0.7055 | 0.7055 |
Factors involved in megakaryocyte development and platelet production(R) | 4.11E-06 | 1.40E-04 | 0.6038 | 0.6038 |
TCR signaling in naïve CD4+ T cells(N) | 5.57E-06 | 1.73E-04 | 0.4304 | 0.4304 |
Neutrophil degranulation(R) | 1.12E-05 | 3.24E-04 | 0.4188 | 0.4203 |
Cell Cycle Checkpoints(R) | 2.28E-05 | 5.24E-04 | 0.7494 | 0.7494 |
Intra-Golgi and retrograde Golgi-to-ER traffic(R) | 1.85E-04 | 3.02E-03 | 0.6953 | 0.6953 |
Oocyte meiosis(K) | 1.94E-03 | 0.0213 | 0.0207 | 0.4203 |
Progesterone-mediated oocyte maturation(K) | 2.72E-03 | 0.0278 | 0.0496 | 0.4203 |
Cell surface interactions at the vascular wall(R) | 2.79E-03 | 0.0279 | 0.5218 | 0.5218 |