From: Identification and ranking of recurrent neo-epitopes in cancer
A) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cancer entity | Study | Number of patients | HLA-A*01:01 (7.61%) | HLA-A*02:01 (20.36%) | HLA-A*03:01 (6.60%) | HLA-A*11:01 (4.37%) | HLA-B*07:02 (6.51%) | HLA-B*08:01 (4.80%) | HLA-B*15:01 (4.46%) | HLA-C*04:01 (16.69%) | HLA-C*06:02 (5.72%) | HLA-C*07:01 (9.28%) | HLA-C*07:02 (15.39%) |
Bladder Urothelial Carcinoma | BLCA | 69300 | 340 | 638 | 197 | 152 | 142 | 112 | 89 | 223 | 376 | 596 | 383 |
Invasive Breast Carcinoma | BRCA | 204800 | 110 | 1090 | 461 | 199 | 108 | 375 | 120 | 482 | 1411 | 2305 | 1234 |
Cervical Squamous Cell Carcinoma | CESC | 14000 | 58 | 135 | 16 | 17 | 13 | 14 | 23 | 142 | 27 | 66 | 152 |
Colon Adenocarcinoma | COAD | 154840 | 861 | 1628 | 770 | 760 | 450 | 222 | 375 | 2961 | 1019 | 1620 | 1800 |
Esophageal Adenocarcinoma | ESCA | 4750 | 23 | 151 | 26 | 16 | 20 | 5 | 13 | 101 | 23 | 26 | 83 |
Glioblastoma Multiforme | GBM | 3204 | 7 | 17 | 3 | 7 | 0 | 0 | 3 | 8 | 5 | 3 | 3 |
Head & Neck Squamous Cell Carcinoma | HNSC | 58000 | 43 | 208 | 112 | 45 | 81 | 11 | 81 | 301 | 136 | 220 | 175 |
Renal Clear Cell Carcinoma | KIRC | 57600 | 13 | 70 | 23 | 0 | 0 | 8 | 0 | 0 | 10 | 0 | 26 |
Papilliary Renal Cell Carcinoma | KIRP | 8064 | 0 | 6 | 0 | 3 | 0 | 0 | 0 | 29 | 0 | 0 | 0 |
Acute Myeloid Leukemia | LAML | 13500 | 77 | 115 | 0 | 8 | 49 | 0 | 0 | 0 | 48 | 9 | 73 |
Hepatocellular Carcinoma | LIHC | 29700 | 12 | 496 | 131 | 84 | 69 | 12 | 7 | 68 | 69 | 112 | 174 |
Lung Squamous Cell Carcinoma | LUSC | 66000 | 181 | 642 | 328 | 168 | 282 | 13 | 77 | 593 | 151 | 172 | 366 |
Serous Ovarian Cancer | OV | 16800 | 26 | 24 | 33 | 10 | 15 | 2 | 14 | 39 | 9 | 14 | 36 |
Prostate Adenocarcinoma | PRAD | 260000 | 120 | 852 | 69 | 69 | 34 | 50 | 70 | 175 | 387 | 628 | 1202 |
Melanoma | SKCM | 75000 | 2649 | 7890 | 1817 | 936 | 861 | 530 | 203 | 2186 | 438 | 1000 | 2457 |
Stomach Adenocarcinoma | STAD | 25000 | 47 | 172 | 56 | 66 | 26 | 8 | 30 | 206 | 114 | 166 | 130 |
Thyroid Cancer | THCA | 46400 | 394 | 0 | 0 | 0 | 0 | 14 | 0 | 0 | 0 | 0 | 44 |
Endometrial Carcinoma | UCEC | 55000 | 942 | 2804 | 817 | 501 | 369 | 290 | 493 | 2222 | 856 | 1602 | 1779 |
Total | Â | 1161958 | 5904 | 16936 | 4858 | 3033 | 2517 | 1666 | 1598 | 9736 | 5080 | 8539 | 10116 |
B) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Number of candidates in diseases | Â | Â | 55 | 91 | 68 | 64 | 33 | 24 | 24 | 48 | 48 | 50 | 55 |