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Table 11 Predicted HPO terms of P23434 (gene name: GCSH) by our four methods based on NMF

From: HPOAnnotator: improving large-scale prediction of HPO annotations by low-rank approximation with HPO semantic similarities and multiple PPI networks

Method

Predicted HPO terms

Correct

NMF

HP:0002079, HP:0001276, HP:0000007, HP:0007256, HP:0003287, HP:0000718, HP:0000729, HP:0002167, HP:0001268, HP:0002360

2

NMF-NHPO

HP:0000007, HP:0002079, HP:0001250, HP:0001276, HP:0000718, HP:0000729, HP:0012444, HP:0007256, HP:0002360, HP:0000478

3

NMF-PPN

HP:0000007, HP:0001276, HP:0007256, HP:0000729, HP:0000718, HP:0000478, HP:0003287, HP:0001268, HP:0001298, HP:0001250

4

HPOAnnotator

HP:0000007, HP:0001250, HP:0001298, HP:0000005, HP:0000707, HP:0000718, HP:0002167, HP:0000711, HP:0000924, HP:0000234

5

True

HP:0000007, HP:0000711, HP:0000718, HP:0001250, HP:0001298, HP:0001522, HP:0002086, HP:0002795, HP:0100247, HP:0100710

 
  1. Correctly predicted HPO terms are in boldface
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