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Table 9 Seven true predictions out of the top 30 results (by HPOAnnotator) among all newly added annotations

From: HPOAnnotator: improving large-scale prediction of HPO annotations by low-rank approximation with HPO semantic similarities and multiple PPI networks

Rank

Protein ID

Protein name

Gene name

HPO ID

HPO name

2

Q02388

Collagen alpha-1(VII) chain (Long-chain collagen) (LC collagen)

COL7A1

HP:0001072

Thickened skin

7

Q9UBX5

Fibulin-5

FBLN5 DANCE, UNQ184/PRO210

HP:0012638

Abnormality of nervous system physiology

17

Q9H5I5

Piezo-type mechanosensitive ion channel component 2 (Protein FAM38B)

PIEZO2

HP:0000422

Abnormality of the nasal bridge

19

O43175

D-3-phosphoglycerate dehydrogenase (3-PGDH) (EC 1.1.1.95) (2-oxoglutarate reductase) (EC 1.1.1.399) (Malate dehydrogenase) (EC 1.1.1.37)

PHGDH

HP:0000366

Abnormality of the nose

24

Q02388

Collagen alpha-1(VII) chain (Long-chain collagen) (LC collagen)

COL7A1

HP:0000962

Hyperkeratosis

26

Q04656

Copper-transporting ATPase 1 (EC 3.6.3.54) (Copper pump 1) (Menkes disease-associated protein)

ATP7A

HP:0002650

Scoliosis

27

P43026

Growth/differentiation factor 5

GDF5 BMP14, CDMP1

HP:0005622

Broad long bones

  1. These seven annotations were not in the training data (Data-201706), but found in the latest release (Data-201712)