Table 4 The average NMIs, ACCs and ARIs and standard errors obtained by the ISC and other comparison partners on colorectal cancer datasets
Methods | DNA methylation+ | DNA methylation+ | miRNA expression+ | DNA methylation+miRNA | |
|---|---|---|---|---|---|
miRNA expression | mRNA expression | mRNA expression | expression+mRNA expression | ||
NMI | SNF | 0.247 ±0.001 | 0.247 ±0.004 | 0.330 ±0.003 | 0.276 ±0.000 |
Coreg | 0.023 ±0.000 | 0.186 ±0.000 | 0.186 ±0.000 | 0.234 ±0.008 | |
ECMC | 0.164 ±0.000 | 0.164 ±0.000 | 0.091 ±0.004 | 0.138 ±0.006 | |
ISC-C | 0.372 ±0.006 | 0.149 ±0.001 | 0.137 ±0.015 | 0.012 ±0.004 | |
ISC-S1 | 0.118 ±0.005 | 0.338 ±0.004 | —— | 0.288 ±0.002 | |
ISC-S2 | 0.019 ±0.002 | —— | 0.046 ±0.007 | 0.009 ±0.005 | |
ISC-S3 | —— | 0.175 ±0.002 | 0.263 ±0.003 | 0.178 ±0.001 | |
ACC | SNF | 0.835 ±0.004 | 0.800 ±0.006 | 0.847 ±0.003 | 0.835 ±0.005 |
Coreg | 0.812 ±0.000 | 0.812 ±0.000 | 0.812 ±0.000 | 0.812 ±0.000 | |
ECMC | 0.741 ±0.000 | 0.741 ±0.000 | 0.642 ±0.005 | 0.706 ±0.004 | |
ISC-C | 0.871 ±0.003 | 0.602 ±0.002 | 0.689 ±0.000 | 0.567 ±0.004 | |
ISC-S1 | 0.698 ±0.004 | 0.859 ±0.004 | —— | 0.843 ±0.006 | |
ISC-S2 | 0.583 ±0.009 | —— | 0.685 ±0.008 | 0.566 ±0.002 | |
ISC-S3 | —— | 0.779 ±0.007 | 0.828 ±0.001 | 0.757 ±0.003 | |
ARI | SNF | 0.391 ±0.003 | 0.310 ±0.005 | 0.442 ±0.004 | 0.402 ±0.004 |
Coreg | 0.031 ±0.003 | 0.250 ±0.000 | 0.250 ±0.000 | 0.336 ±0.013 | |
ECMC | 0.209 ±0.000 | 0.209 ±0.000 | 0.080 ±0.005 | 0.160 ±0.006 | |
ISC-C | 0.506 ±0.001 | -0.007 ±0.009 | 0.113 ±0.003 | 0.000 ±0.017 | |
ISC-S1 | 0.139 ±0.000 | 0.469 ±0.006 | —— | 0.422 ±0.005 | |
ISC-S2 | 0.015 ±0.002 | —— | 0.098 ±0.008 | 0.011 ±0.009 | |
ISC-S3 | —— | 0.238 ±0.005 | 0.384 ±0.006 | 0.237 ±0.006 |