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Table 5 Characteristics of included GEO miRNA-chips

From: MiR-182-5p and its target HOXA9 in non-small cell lung cancer: a clinical and in-silico exploration with the combination of RT-qPCR, miRNA-seq and miRNA-chip

  First author Experiment type Sample type Platform Cancer (N) Cancer (M) Cancer (SD) Noncancer (N) Noncancer (M) Noncancer (SD) TP FP FN TN
GSE14936 Seike M Non-coding RNA profiling by array tissue GPL8879 10 7.763 0.850 9 8.137 0.819 8 7 2 2
GSE15008 Tan X Non-coding RNA profiling by array tissue GPL2009 187 11.401 1.255 188 9.697 0.867 44 1 143 187
GSE16512 Lodes MJ Non-coding RNA profiling by array serum GPL8686 3 −0.024 0.031 14 −0.338 0.23 1 1 2 13
GSE17681 Keller A miRNA Profiling serum GPL9040 17 12.652 0.756 19 12.174 0.753 7 1 10 18
GSE18692A Puisségur MP Non-coding RNA profiling by array tissue GPL4717 7 0.458 0.304 7 0.251 0.153 5 1 2 6
GSE18692B Puisségur MP Non-coding RNA profiling by array tissue GPL4718 13 0.288 0.343 13 0.403 0.34 10 11 3 2
GSE19945 Ohba T Non-coding RNA profiling by array tissue GPL9948 20 −0.325 1.781 8 −2.799 0.554 15 0 5 8
GSE24709 Andreas Keller Non-coding RNA profiling by array serum GPL9040 28 12.253 0.532 19 11.626 0.775 17 0 11 19
GSE27486 Santosh Kumar Patnaik Non-coding RNA profiling by array serum GPL11432 22 5.680 0.428 23 5.731 0.646 11 10 12 13
GSE27705 Chris Fenton Non-coding RNA profiling by array tissue GPL11432 20 0.106 0.934 10 −1.187 0.196 19 1 1 9
GSE29248 lina ma Non-coding RNA profiling by array tissue GPL8179 6 12.643 0.704 6 11.099 2.171 3 0 3 6
GSE31568 Andreas Keller Non-coding RNA profiling by array serum GPL9040 32 12.173 0.607 70 11.847 0.972 12 5 20 65
GSE33045 Sonia Molina-Pinelo Expression profiling by RT-PCR serum GPL13987 12 12.618 1.642 8 13.291 1.223 12 7 0 1
GSE36681 Jin Sung Jang Non-coding RNA profiling by array tissue GPL8179 103 12.151 1.215 103 11.282 1.232 16 1 87 102
GSE40738 Santosh Kumar Patnaik Non-coding RNA profiling by array serum GPL16016 81 5.225 0.581 56 5.025 0.675 8 1 73 55
GSE46729 Zongli Xu Non-coding RNA profiling by array serum GPL8786 24 4.530 0.227 24 4.423 0.215 5 1 19 23
GSE47525 Maikel Wouters Non-coding RNA profiling by array tissue GPL17222 18 4.927 0.716 14 4.727 0.412 7 1 11 13
GSE48414 Maria Moksnes Bjaanæs Non-coding RNA profiling by array tissue GPL16770 154 −0.364 2.547 20 −3.548 2.166 120 0 34 20
GSE51853 Takashi Takahashi Non-coding RNA profiling by array tissue GPL7341 124 1.177 1.045 5 −1.459 0.381 120 0 4 5
GSE53882 Heng-Ying Pu Expression profiling by array tissue GPL18130 397 1.245 0.446 151 1.172 0.428 11 1 386 150
GSE56036 Satoshi Kondo Non-coding RNA profiling by array tissue GPL15446 28 6.397 1.319 27 4.166 0.663 25 1 3 26
GSE61741 Andreas Keller Non-coding RNA profiling by array serum GPL9040 72 12.342 0.656 94 12.302 0.514 26 25 46 69
GSE68951 Christina Backes Non-coding RNA profiling by array serum GPL16770 203 1.225 0.336 12 1.149 0.144 92 1 111 11
GSE74190 Lu Shaohua Non-coding RNA profiling by array tissue GPL19622 66 0.761 1.650 44 −3.404 2.568 36 1 30 43
GSE93300 qu lili Non-coding RNA profiling by array tissue GPL21576 9 −6.044 0.938 4 −8.187 0.885 8 0 1 4
  1. Note: N: number; M: median; SD: standard deviation; TP: true positivity; FP: false positivity; FN: false negativity; TN: true negativity
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BMC Medical Genomics

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