Table 5 Characteristics of included GEO miRNA-chips
| Â | First author | Experiment type | Sample type | Platform | Cancer (N) | Cancer (M) | Cancer (SD) | Noncancer (N) | Noncancer (M) | Noncancer (SD) | TP | FP | FN | TN |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSE14936 | Seike M | Non-coding RNA profiling by array | tissue | GPL8879 | 10 | 7.763 | 0.850 | 9 | 8.137 | 0.819 | 8 | 7 | 2 | 2 |
GSE15008 | Tan X | Non-coding RNA profiling by array | tissue | GPL2009 | 187 | 11.401 | 1.255 | 188 | 9.697 | 0.867 | 44 | 1 | 143 | 187 |
GSE16512 | Lodes MJ | Non-coding RNA profiling by array | serum | GPL8686 | 3 | −0.024 | 0.031 | 14 | −0.338 | 0.23 | 1 | 1 | 2 | 13 |
GSE17681 | Keller A | miRNA Profiling | serum | GPL9040 | 17 | 12.652 | 0.756 | 19 | 12.174 | 0.753 | 7 | 1 | 10 | 18 |
GSE18692A | Puisségur MP | Non-coding RNA profiling by array | tissue | GPL4717 | 7 | 0.458 | 0.304 | 7 | 0.251 | 0.153 | 5 | 1 | 2 | 6 |
GSE18692B | Puisségur MP | Non-coding RNA profiling by array | tissue | GPL4718 | 13 | 0.288 | 0.343 | 13 | 0.403 | 0.34 | 10 | 11 | 3 | 2 |
GSE19945 | Ohba T | Non-coding RNA profiling by array | tissue | GPL9948 | 20 | −0.325 | 1.781 | 8 | −2.799 | 0.554 | 15 | 0 | 5 | 8 |
GSE24709 | Andreas Keller | Non-coding RNA profiling by array | serum | GPL9040 | 28 | 12.253 | 0.532 | 19 | 11.626 | 0.775 | 17 | 0 | 11 | 19 |
GSE27486 | Santosh Kumar Patnaik | Non-coding RNA profiling by array | serum | GPL11432 | 22 | 5.680 | 0.428 | 23 | 5.731 | 0.646 | 11 | 10 | 12 | 13 |
GSE27705 | Chris Fenton | Non-coding RNA profiling by array | tissue | GPL11432 | 20 | 0.106 | 0.934 | 10 | −1.187 | 0.196 | 19 | 1 | 1 | 9 |
GSE29248 | lina ma | Non-coding RNA profiling by array | tissue | GPL8179 | 6 | 12.643 | 0.704 | 6 | 11.099 | 2.171 | 3 | 0 | 3 | 6 |
GSE31568 | Andreas Keller | Non-coding RNA profiling by array | serum | GPL9040 | 32 | 12.173 | 0.607 | 70 | 11.847 | 0.972 | 12 | 5 | 20 | 65 |
GSE33045 | Sonia Molina-Pinelo | Expression profiling by RT-PCR | serum | GPL13987 | 12 | 12.618 | 1.642 | 8 | 13.291 | 1.223 | 12 | 7 | 0 | 1 |
GSE36681 | Jin Sung Jang | Non-coding RNA profiling by array | tissue | GPL8179 | 103 | 12.151 | 1.215 | 103 | 11.282 | 1.232 | 16 | 1 | 87 | 102 |
GSE40738 | Santosh Kumar Patnaik | Non-coding RNA profiling by array | serum | GPL16016 | 81 | 5.225 | 0.581 | 56 | 5.025 | 0.675 | 8 | 1 | 73 | 55 |
GSE46729 | Zongli Xu | Non-coding RNA profiling by array | serum | GPL8786 | 24 | 4.530 | 0.227 | 24 | 4.423 | 0.215 | 5 | 1 | 19 | 23 |
GSE47525 | Maikel Wouters | Non-coding RNA profiling by array | tissue | GPL17222 | 18 | 4.927 | 0.716 | 14 | 4.727 | 0.412 | 7 | 1 | 11 | 13 |
GSE48414 | Maria Moksnes Bjaanæs | Non-coding RNA profiling by array | tissue | GPL16770 | 154 | −0.364 | 2.547 | 20 | −3.548 | 2.166 | 120 | 0 | 34 | 20 |
GSE51853 | Takashi Takahashi | Non-coding RNA profiling by array | tissue | GPL7341 | 124 | 1.177 | 1.045 | 5 | −1.459 | 0.381 | 120 | 0 | 4 | 5 |
GSE53882 | Heng-Ying Pu | Expression profiling by array | tissue | GPL18130 | 397 | 1.245 | 0.446 | 151 | 1.172 | 0.428 | 11 | 1 | 386 | 150 |
GSE56036 | Satoshi Kondo | Non-coding RNA profiling by array | tissue | GPL15446 | 28 | 6.397 | 1.319 | 27 | 4.166 | 0.663 | 25 | 1 | 3 | 26 |
GSE61741 | Andreas Keller | Non-coding RNA profiling by array | serum | GPL9040 | 72 | 12.342 | 0.656 | 94 | 12.302 | 0.514 | 26 | 25 | 46 | 69 |
GSE68951 | Christina Backes | Non-coding RNA profiling by array | serum | GPL16770 | 203 | 1.225 | 0.336 | 12 | 1.149 | 0.144 | 92 | 1 | 111 | 11 |
GSE74190 | Lu Shaohua | Non-coding RNA profiling by array | tissue | GPL19622 | 66 | 0.761 | 1.650 | 44 | −3.404 | 2.568 | 36 | 1 | 30 | 43 |
GSE93300 | qu lili | Non-coding RNA profiling by array | tissue | GPL21576 | 9 | −6.044 | 0.938 | 4 | −8.187 | 0.885 | 8 | 0 | 1 | 4 |