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Table 5 Characteristics of included GEO miRNA-chips

From: MiR-182-5p and its target HOXA9 in non-small cell lung cancer: a clinical and in-silico exploration with the combination of RT-qPCR, miRNA-seq and miRNA-chip

 First authorExperiment typeSample typePlatformCancer (N)Cancer (M)Cancer (SD)Noncancer (N)Noncancer (M)Noncancer (SD)TPFPFNTN
GSE14936Seike MNon-coding RNA profiling by arraytissueGPL8879107.7630.85098.1370.8198722
GSE15008Tan XNon-coding RNA profiling by arraytissueGPL200918711.4011.2551889.6970.867441143187
GSE16512Lodes MJNon-coding RNA profiling by arrayserumGPL86863−0.0240.03114−0.3380.2311213
GSE17681Keller AmiRNA ProfilingserumGPL90401712.6520.7561912.1740.753711018
GSE18692APuisségur MPNon-coding RNA profiling by arraytissueGPL471770.4580.30470.2510.1535126
GSE18692BPuisségur MPNon-coding RNA profiling by arraytissueGPL4718130.2880.343130.4030.34101132
GSE19945Ohba TNon-coding RNA profiling by arraytissueGPL994820−0.3251.7818−2.7990.55415058
GSE24709Andreas KellerNon-coding RNA profiling by arrayserumGPL90402812.2530.5321911.6260.7751701119
GSE27486Santosh Kumar PatnaikNon-coding RNA profiling by arrayserumGPL11432225.6800.428235.7310.64611101213
GSE27705Chris FentonNon-coding RNA profiling by arraytissueGPL11432200.1060.93410−1.1870.19619119
GSE29248lina maNon-coding RNA profiling by arraytissueGPL8179612.6430.704611.0992.1713036
GSE31568Andreas KellerNon-coding RNA profiling by arrayserumGPL90403212.1730.6077011.8470.9721252065
GSE33045Sonia Molina-PineloExpression profiling by RT-PCRserumGPL139871212.6181.642813.2911.22312701
GSE36681Jin Sung JangNon-coding RNA profiling by arraytissueGPL817910312.1511.21510311.2821.23216187102
GSE40738Santosh Kumar PatnaikNon-coding RNA profiling by arrayserumGPL16016815.2250.581565.0250.675817355
GSE46729Zongli XuNon-coding RNA profiling by arrayserumGPL8786244.5300.227244.4230.215511923
GSE47525Maikel WoutersNon-coding RNA profiling by arraytissueGPL17222184.9270.716144.7270.412711113
GSE48414Maria Moksnes BjaanæsNon-coding RNA profiling by arraytissueGPL16770154−0.3642.54720−3.5482.16612003420
GSE51853Takashi TakahashiNon-coding RNA profiling by arraytissueGPL73411241.1771.0455−1.4590.381120045
GSE53882Heng-Ying PuExpression profiling by arraytissueGPL181303971.2450.4461511.1720.428111386150
GSE56036Satoshi KondoNon-coding RNA profiling by arraytissueGPL15446286.3971.319274.1660.663251326
GSE61741Andreas KellerNon-coding RNA profiling by arrayserumGPL90407212.3420.6569412.3020.51426254669
GSE68951Christina BackesNon-coding RNA profiling by arrayserumGPL167702031.2250.336121.1490.14492111111
GSE74190Lu ShaohuaNon-coding RNA profiling by arraytissueGPL19622660.7611.65044−3.4042.5683613043
GSE93300qu liliNon-coding RNA profiling by arraytissueGPL215769−6.0440.9384−8.1870.8858014
  1. Note: N: number; M: median; SD: standard deviation; TP: true positivity; FP: false positivity; FN: false negativity; TN: true negativity