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Table 1 Cancer cell lines used for accurateness testing. Coverage and number of deleted and amplified genes extracted from COSMIC are presented. Copy numbers were called from sequenced genomes and experimentally confirmed with PICNIC [23]

From: MetaCNV - a consensus approach to infer accurate copy numbers from low coverage data

Cancer cell lineCoverage# of amplified genes# of deleted genesTotal # of genes with CNVsRatio amplified/deleted genes
HCC1187104x154462003.48
HCC221893x200362365.55
MCF762x4930791.63
PC376x1792224010.81
Single-cell SKBR36 stepwise merged single cells with 1x to 6x161291905.55