Table 1 Features description
From: A machine learning framework for genotyping the structural variations with copy number variant
Description of Features | ||
|---|---|---|
1 | Abnormal read | The number of abnormal insert size read pairs |
2 | Normal read | The number of normal insert size read pairs |
3 | Incompletely mapped reads | The number of incompletely mapped read pairs |
4 | Fully mapped read | The number of read pairs that can fully mapped to the reference |
5 | Split mapped read | The number of split mapped reads |
6 | Single mapped read | The number of single mapped reads |
7 | Unmapped read | The number of the mutated region reads which comes from the Samtools |
8 | Mapping qualities | Sum of mapping qualities of anchor reads |
9 | Read depth | The read depth of the mutated region |
10 | Weighted read depth | The read depth of the mutated region weighted by mapping qualities |
11 | Extended weighted read depth | Extended the weighted read depth to up down 100 bps each |
12 | Affected read | The number of affected reads |
13 | Variant length | The length of structural variant |
14 | Direction 1 | The number of reads which clipping from 5’ during initial mapping |
15 | Direction 2 | The number of reads which clipping from 3’ during initial mapping |