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Table 1 Features description

From: A machine learning framework for genotyping the structural variations with copy number variant

Description of Features
1 Abnormal read The number of abnormal insert size read pairs
2 Normal read The number of normal insert size read pairs
3 Incompletely mapped reads The number of incompletely mapped read pairs
4 Fully mapped read The number of read pairs that can fully mapped to the reference
5 Split mapped read The number of split mapped reads
6 Single mapped read The number of single mapped reads
7 Unmapped read The number of the mutated region reads which comes from the Samtools
8 Mapping qualities Sum of mapping qualities of anchor reads
9 Read depth The read depth of the mutated region
10 Weighted read depth The read depth of the mutated region weighted by mapping qualities
11 Extended weighted read depth Extended the weighted read depth to up down 100 bps each
12 Affected read The number of affected reads
13 Variant length The length of structural variant
14 Direction 1 The number of reads which clipping from 5’ during initial mapping
15 Direction 2 The number of reads which clipping from 3’ during initial mapping