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Table 2 Performance comparison on simulated datasets

From: A machine learning framework for genotyping the structural variations with copy number variant

Copy Number Coverage The proposed method Gindel Facets GATK
2 5 × 0.8100 0.3054 0.4710 0.5328
  10 × 0.8353 0.5342 0.5125 0.8157
  15 × 0.8477 0.5728 0.5125 0.7697
  20 × 0.8510 0.6175 0.5150 0.7039
3 5 × 0.8142 0.4137 0.4713 0.7368
  10 × 0.8195 0.4205 0.4912 0.4539
  15 × 0.8168 0.4273 0.5124 0.8157
  20 × 0.8195 0.4296 0.4625 0.8355
4 5 × 0.8234 0.4296 0.5467 0.2560
  10 × 0.8247 0.4201 0.5626 0.5942
  15 × 0.8234 0.4268 0.5672 0.6714
  20 × 0.8395 0.4336 0.5695 0.7101
5 5 × 0.8313 0.4796 0.5573 0.3125
  10 × 0.8358 0.4877 0.5630 0.6057
  15 × 0.8356 0.4905 0.5645 0.6153
  20 × 0.8413 0.4592 0.5680 0.7788