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Table 11 Number of clonal and subclonal variants detected in diploid regions common to FF and FFPE. For both clonal and subclonal variants the F1-score between the FF and the FFPE variants was calculated. Variants were called using the at least two variant calling strategy

From: Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples

Clonality

Clonal

Subclonal

At least 2

Patient ID

FF

FFPE

Overlap

F1-score

FF

FFPE

Overlap

F1-score

F1-score

UZ001

3229

3246

2795

0.86

372

0

0

0.00

0.83

GeL007

662

25

1

0.04

1862

1183

223

0.19

0.23

GeL08

1109

2417

996

0.41

425

0

0

0.00

0.39

GeL024

1016

296

244

0.82

275

1413

4

0.00

0.42

GeL028

1037

1585

908

0.57

721

0

0

0.00

0.53

GeL004

1074

1074

965

0.90

710

630

297

0.47

0.71

GeL032

3249

202

126

0.62

506

2103

4

0.00

0.06

GeL065

1434

1362

1287

0.94

587

552

321

0.58

0.63

GeL300

9660

9821

8890

0.91

354

678

16

0.02

0.87

GeL365

1099

1013

962

0.95

1331

1309

937

0.72

0.80