From: Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples
Clonality | Clonal | Subclonal | At least 2 | ||||||
---|---|---|---|---|---|---|---|---|---|
Patient ID | FF | FFPE | Overlap | F1-score | FF | FFPE | Overlap | F1-score | F1-score |
UZ001 | 3229 | 3246 | 2795 | 0.86 | 372 | 0 | 0 | 0.00 | 0.83 |
GeL007 | 662 | 25 | 1 | 0.04 | 1862 | 1183 | 223 | 0.19 | 0.23 |
GeL08 | 1109 | 2417 | 996 | 0.41 | 425 | 0 | 0 | 0.00 | 0.39 |
GeL024 | 1016 | 296 | 244 | 0.82 | 275 | 1413 | 4 | 0.00 | 0.42 |
GeL028 | 1037 | 1585 | 908 | 0.57 | 721 | 0 | 0 | 0.00 | 0.53 |
GeL004 | 1074 | 1074 | 965 | 0.90 | 710 | 630 | 297 | 0.47 | 0.71 |
GeL032 | 3249 | 202 | 126 | 0.62 | 506 | 2103 | 4 | 0.00 | 0.06 |
GeL065 | 1434 | 1362 | 1287 | 0.94 | 587 | 552 | 321 | 0.58 | 0.63 |
GeL300 | 9660 | 9821 | 8890 | 0.91 | 354 | 678 | 16 | 0.02 | 0.87 |
GeL365 | 1099 | 1013 | 962 | 0.95 | 1331 | 1309 | 937 | 0.72 | 0.80 |