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Table 4 Screening space for the threshold optimization for each variant caller

From: Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples

Strelka2

Shimmer

Somatic EVS from 5 to 20 (steps of 0.25)

Q-value from 0.0005 to 0.05 (steps of 0.0005)

Mutect2

VarScan2

TLOD from 0 to 200 (steps of 1)

Somatic p-value from 0.00005 to 0.01 (steps of 0.00005)