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Table 1 Region of interests of custom panel

From: Next-generation sequencing analysis of endometrial screening liquid-based cytology specimens: a comparative study to tissue specimens

60 genes

17 MSI regions

Target

Loci

Gene

AKT1

CTNNB1

MAP2K1

PIK3CA

Bat-25

chr4:55598208–55,598,241

KIT

APC

DDR2

MAP2K2

PIK3R1

Bat-26

chr2:47641403–47,641,591

MSH2

ATM

EGFR

MAP2K4

PMS2

MONO-27

chr2:39564890–39,564,926

MAP4K3

AR

ERBB2

MED12

PTEN

NR-21

chr14:23652343–23,652,372

SLC7A8

ARID1A

ERBB3

MET

RB1

NR-24

chr2:95849358–95,849,389

ZNF2

BARD1

ERBB4

MDM2

RAD51

MSI-1

chr1:201754407–201,754,432

NAV1

BRAF

ESR1

MLH1

STK11

MSI-3

chr2:62063090–62,063,115

FAN161A

BRCA1

FGFR1

MSH2

TP53

MSI-4

chr2:108479619–108,479,675

RGPD4

BRCA2

FGFR2

MSH6

RET

MSI-6

chr5:172421757–172,421,780

ATP6V0E1

BRIP1

FGFR3

MTOR

 

MSI-7

chr6:142691947–142,691,972

GPR126

CCND1

FLT3

MUTYH

 

MSI-8

chr7:1787516–1,787,541

ELFN1

CD274

HRAS

MYC

 

MSI-11

chr11:106695511–106,695,531

GUCY1A2

CDK4

IDH1

NF1

 

HSPH1-T17

chr13:31722617–31,722,642

HSPH1

CDK6

IDH2

NRAS

 

MSI-12

chr15:45897768–45,897,790

BLOC1S6

CDKN2A

KDR

PALB2

 

MSI-13

chr16:18882656–18,882,679

SMG1

CDH1

KIT

PDCD1

 

MSI-14

chr17:19314914–19,314,940

RNF112

CTLA4

KRAS

PDGFRA

 

EWSR1

chr22:29696465–29,696,489

EWSR1