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Table 3 Top 20 downregulated mRNAs, lncRNAs, and miRNAs

From: Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma

  symbol logFC AveExpr t PValue FDR B
mRNA
 ENSG00000104267 CA2 −5.61 5.14 −18.17 0.00 0.00 118.92
 ENSG00000248144 ADH1C −5.61 3.53 −17.14 0.00 0.00 107.73
 ENSG00000007306 CEACAM7 −5.62 6.08 −11.41 0.00 0.00 50.10
 ENSG00000269404 SPIB −5.71 0.57 −34.77 0.00 0.00 298.79
 ENSG00000168079 SCARA5 −6.00 1.08 −30.10 0.00 0.00 250.25
 ENSG00000109182 CWH43 −6.01 −0.28 −23.36 0.00 0.00 176.45
 ENSG00000080493 SLC4A4 −6.01 2.61 −23.50 0.00 0.00 178.10
 ENSG00000016490 CLCA1 −6.37 4.95 −9.29 0.00 0.00 32.04
 ENSG00000142959 BEST4 −6.53 0.29 −45.79 0.00 0.00 402.65
 ENSG00000196616 ADH1B −6.69 0.74 −26.47 0.00 0.00 210.91
 ENSG00000091138 SLC26A3 −6.79 5.53 −11.68 0.00 0.00 52.58
 ENSG00000197273 GUCA2A −6.81 2.83 −24.00 0.00 0.00 183.57
 ENSG00000167080 B4GALNT2 −6.82 0.89 −21.91 0.00 0.00 160.29
 ENSG00000204936 CD177 −7.45 1.83 −26.62 0.00 0.00 212.57
 ENSG00000100604 CHGA −7.45 1.25 −25.15 0.00 0.00 196.43
 ENSG00000167434 CA4 −7.77 1.59 −23.02 0.00 0.00 172.71
 ENSG00000071203 MS4A12 −7.93 0.78 −24.35 0.00 0.00 187.48
 ENSG00000174992 ZG16 −8.12 2.90 −18.31 0.00 0.00 120.48
 ENSG00000016602 CLCA4 −8.41 2.08 −22.49 0.00 0.00 166.82
 ENSG00000103375 AQP8 −9.02 0.89 −27.39 0.00 0.00 220.97
LncRNA
 ENSG00000186594 MIR22HG −1.92 3.37 −17.54 0.00 0.00 112.01
 ENSG00000227258 SMIM2-AS1 −1.92 1.43 −9.98 0.00 0.00 37.78
 ENSG00000167912 AC090152.1 −1.96 0.17 −10.72 0.00 0.00 44.25
 ENSG00000224259 LINC01133 −1.97 3.44 −12.97 0.00 0.00 64.65
 ENSG00000167117 LINC00483 −2.01 3.21 −11.42 0.00 0.00 50.12
 ENSG00000225953 SATB2-AS1 −2.02 2.74 −8.48 0.00 0.00 25.84
 ENSG00000266036 AC016888.1 −2.12 0.23 −13.73 0.00 0.00 72.38
 ENSG00000229155 LINC02038 −2.14 0.02 −16.45 0.00 0.00 100.45
 ENSG00000268388 FENDRR −2.17 3.13 −12.79 0.00 0.00 62.96
 ENSG00000237070 AC005550.3 −2.19 0.16 −9.16 0.00 0.00 31.33
 ENSG00000276855 AC015922.4 −2.22 0.04 −12.81 0.00 0.00 63.38
 ENSG00000258837 AL133370.1 −2.37 0.49 −7.89 0.00 0.00 21.86
 ENSG00000198788 MUC2 −2.40 8.10 −4.33 0.00 0.00 1.46
 ENSG00000229619 MBNL1-AS1 −2.41 1.31 −19.67 0.00 0.00 135.40
 ENSG00000259342 AC025580.1 −2.46 1.56 −12.25 0.00 0.00 57.93
 ENSG00000225335 AC016027.1 −2.50 0.61 −26.88 0.00 0.00 215.20
 ENSG00000188242 PP7080 −2.75 4.85 −14.61 0.00 0.00 81.01
 ENSG00000224189 HAGLR −2.91 2.84 −15.85 0.00 0.00 93.94
 ENSG00000226777 FAM30A −3.26 −0.28 −13.10 0.00 0.00 66.15
 ENSG00000256643 LINC02441 −3.29 −0.05 −13.32 0.00 0.00 68.27
   logFC AveExpr t PValue FDR B
miRNA
 hsa-miR-378a-5p −4.20 6.76 −15.80 0.00 0.00 91.92
 hsa-miR-1180-3p −4.23 3.03 −11.14 0.00 0.00 47.49
 hsa-miR-150-3p −4.27 0.56 −9.24 0.00 0.00 31.83
 hsa-miR-671-3p −4.28 1.31 −16.20 0.00 0.00 95.92
 hsa-let-7d-3p −4.34 8.50 −18.59 0.00 0.00 120.89
 hsa-miR-125a-5p −4.39 7.80 −16.53 0.00 0.00 99.38
 hsa-miR-1976 −4.44 2.84 −18.10 0.00 0.00 115.64
 hsa-miR-1306-5p −4.46 2.46 −17.48 0.00 0.00 109.21
 hsa-miR-149-5p −4.49 3.27 −13.05 0.00 0.00 64.85
 hsa-miR-766-3p −4.50 2.50 −18.10 0.00 0.00 115.63
 hsa-miR-194-3p −4.51 7.68 −13.59 0.00 0.00 70.05
 hsa-miR-133a-3p −4.59 3.71 −8.32 0.00 0.00 24.94
 hsa-miR-197-3p −4.97 7.87 −22.64 0.00 0.00 163.76
 hsa-miR-642a-5p −5.07 1.39 −11.47 0.00 0.00 50.39
 hsa-miR-6511b-3p −5.37 0.31 −17.29 0.00 0.00 107.15
 hsa-miR-139-5p −5.38 4.32 −17.29 0.00 0.00 107.26
 hsa-miR-328-3p −5.63 3.77 −21.46 0.00 0.00 151.16
 hsa-miR-129-5p −5.76 0.92 −13.35 0.00 0.00 67.73
 hsa-miR-139-3p −6.10 1.99 −14.44 0.00 0.00 78.35
 hsa-miR-486-5p −6.12 5.62 −14.35 0.00 0.00 77.43