High dimensional model representation of log likelihood ratio: binary classification with SNP data

BMC Medical Genomics

Table 4 Top 25 SNP pairs and their associated risk for the lung cancer dataset

Rank	SNP ID	Gene	Recessive	Value	SNP ID	Gene	Recessive	Value	+/− Risk	Risk
1	rs2241873	SAG	FALSE	0	rs2506262	-	FALSE	1	+	3.09
2	rs11649975	NXN	FALSE	0	rs17168935	MEOX2	FALSE	0	+	3.04
3	rs17068439	SYNPR	FALSE	0	rs17168935	MEOX2	FALSE	0	+	3
4	rs7226895	-	FALSE	1	rs17168935	MEOX2	FALSE	0	+	3
5	rs10077754	CTNND2	TRUE	1	rs4889210	LINC02170	FALSE	0	+	3
6	rs11032706	-	FALSE	0	rs16943878	-	FALSE	0	+	2.94
7	rs9318973	-	FALSE	0	rs11708764	-	FALSE	0	+	2.94
8	rs7615876	-	FALSE	0	rs17168935	MEOX2	FALSE	0	+	2.94
9	rs10246303	C1GALT1	TRUE	1	rs16948197	TAOK3	FALSE	0	+	2.94
10	rs10739001	DOCK8	FALSE	0	rs9493858	SGK1	FALSE	0	+	2.89
11	rs9493858	SGK1	TRUE	0	rs9493858	SGK1	FALSE	0	+	2.89
12	rs2151274	-	FALSE	0	rs17168935	MEOX2	FALSE	0	+	2.89
13	rs16914914	-	FALSE	0	rs17168935	MEOX2	FALSE	0	+	2.89
14	rs11649975	NXN	FALSE	0	rs9493858	SGK1	FALSE	0	+	2.89
15	rs4325674	PPP5D1	FALSE	0	rs9517847	CLYBL	FALSE	0	+	2.89
16	rs9678660	-	FALSE	0	rs9493858	SGK1	FALSE	0	+	2.89
17	rs11876308	-	FALSE	0	rs771573	-	FALSE	0	+	2.89
18	rs4455790	RP1L1	FALSE	0	rs2059645	PSD3	FALSE	0	+	2.89
19	rs202589	-	FALSE	0	rs17168935	MEOX2	FALSE	0	+	2.89
20	rs9577032	LOC105370152	FALSE	0	rs6995294	-	FALSE	0	+	2.89
21	rs5982322	MIR325HG	TRUE	0	rs7615876	-	FALSE	0	+	2.89
22	rs2059645	PSD3	TRUE	0	rs4455790	RP1L1	FALSE	0	+	2.89
23	rs11200876	-	FALSE	0	rs12585722	-	FALSE	0	+	2.89
24	rs9595630	N4BP2L2	TRUE	0	rs9493858	SGK1	FALSE	0	+	2.89
25	rs13092498	LINC02008	FALSE	0	rs475385	CEP164	FALSE	0	+	2.89

ISSN: 1755-8794