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Table 3 Enrichment results of the candidate gene markers

From: A predictive model for assessing prognostic risks in gastric cancer patients using gene expression and methylation data

Term

Count

P value

Genes

Biology process

 GO:0006929 ~ substrate-bound cell migration

4

6.96E−04

VEGFC, TNFRSF12A, ATP5B, MYH10

 GO:0032101 ~ regulation of response to external stimulus

10

0.001453

EDNRA, GPX1, ADRB2, CYP27B1, ADORA2B, OSMR, FCER1G, GREM1, ADA, PLAU

 GO:0051186 ~ cofactor metabolic process

11

0.001691

MTHFS, GPX1, ALAS1, HMBS, SUCLG1, MCCC1, ALDOB, GIF, UROD, PDHB, MDH1

 GO:0050727 ~ regulation of inflammatory response

7

0.001717

EDNRA, GPX1, ADRB2, ADORA2B, OSMR, FCER1G, ADA

 GO:0008202 ~ steroid metabolic process

11

0.002193

TM7SF2, OSBPL2, CYP27B1, SULT1B1, INSIG1, SCARB1, NR3C1, CAT, NR0B2, HSD17B8, FDFT1

 GO:0016052 ~ carbohydrate catabolic process

8

0.002391

HYAL2, ALDOB, CHI3L1, FUT1, CTBS, PDHB, MDH1, ENO1

 GO:0006091 ~ generation of precursor metabolites and energy

14

0.002446

NDUFB5, NDUFA9, KL, ATP5B, SUCLG1, FADS1, ALDOB, CRAT, PDHB, GFPT2, CAT, ENO1, ATP5J, MDH1

 GO:0006000 ~ fructose metabolic process

4

0.002665

ALDOB, GFPT2, FBP1, FBP2

 GO:0015980 ~ energy derivation by oxidation of organic compounds

9

0.002965

NDUFB5, KL, NDUFA9, SUCLG1, GFPT2, CRAT, CAT, PDHB, MDH1

 GO:0006090 ~ pyruvate metabolic process

5

0.005245

ALDOB, FBP1, FBP2, PDHX, PDHB

 GO:0030334 ~ regulation of cell migration

9

0.007713

PTPRK, VEGFC, MMP9, PTP4A1, RRAS2, SCARB1, GREM1, SST, ADA

 GO:0006766 ~ vitamin metabolic process

6

0.008483

DHRS3, CYP27B1, ACADM, MCCC1, TMLHE, GIF

 GO:0044271 ~ nitrogen compound biosynthetic process

13

0.008797

ATP5B, HMBS, ATP11B, PFAS, ADA, ADI1, ALAS1, TMLHE, NQO1, UROD, IMPDH1, ATP5J, ATP8A1

 GO:0009310 ~ amine catabolic process

6

0.009967

MAOA, AMT, MCCC1, DDAH1, AUH, ENOSF1

KEGG pathway

 hsa00280:Valine, leucine and isoleucine degradation

6

0.003379

ACADM, IVD, OXCT1, MCCC1, PCCB, AUH

 hsa05219:Bladder cancer

5

0.016087

RPS6KA5, VEGFC, CDKN1A, MMP9, CDK4

 hsa03410:Base excision repair

4

0.047523

POLL, POLD1, NEIL1, PARP1

 hsa00010:Glycolysis/Gluconeogenesis

5

0.045098

ALDOB, FBP1, FBP2, PDHB, ENO1

 hsa00100:Steroid biosynthesis

3

0.045875

TM7SF2, CYP27B1, FDFT1

  1. GO gene oncology, KEGG: Kyoto Encyclopedia of Genes and Genomes