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Table 1 DNA methylation and gene expression datasets used in the study

From: DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation

Dataset Abbreviation in a text Number of samples Platform Reference
Cancer Normal
GSE26126 (DNA methylation) Absher 95 86 Illumina Human Methylation 27 BeadChip array (27 k) [22]
GSE76938 (DNA methylation) Kirby 73 63 Illumina Infinium Human Methylation 450 BeadChip array (HM450) [19]
The Cancer Genome Atlas (TCGA) (DNA methylation) TCGA 503 50 Illumina Infinium Human Methylation 450 BeadChip array (HM450) [34]
Meta-analysis gene expression dataset (previously processed data) Meta expression 887 230 Various [35]
TCGA (gene expression data processed for this publication) [34]
TCGA (DNA methylation together with gene expression) TCGA combined 497 35 Illumina Infinium Human Methylation 450 BeadChip array (HM450) [34]