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Table 1 DNA methylation and gene expression datasets used in the study

From: DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation

Dataset

Abbreviation in a text

Number of samples

Platform

Reference

Cancer

Normal

GSE26126 (DNA methylation)

Absher

95

86

Illumina Human Methylation 27 BeadChip array (27 k)

[22]

GSE76938 (DNA methylation)

Kirby

73

63

Illumina Infinium Human Methylation 450 BeadChip array (HM450)

[19]

The Cancer Genome Atlas (TCGA) (DNA methylation)

TCGA

503

50

Illumina Infinium Human Methylation 450 BeadChip array (HM450)

[34]

Meta-analysis gene expression dataset (previously processed data)

Meta expression

887

230

Various

[35]

TCGA (gene expression data processed for this publication)

[34]

TCGA (DNA methylation together with gene expression)

TCGA combined

497

35

Illumina Infinium Human Methylation 450 BeadChip array (HM450)

[34]