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Table 3 Candidate functional variants in enhancers associated with psoriasis risk

From: An integrated analysis of public genomic data unveils a possible functional mechanism of psoriasis risk via a long-range ERRFI1 enhancer

Chr.

Position

Variant

Alleles (P/R)

RAF

Gene

TF

Marker (P-value, Study)

r2

1

8,257,959

rs72635708

T/C

0.2286

ERRFI1

ARNT, BACH1, FOS, MAFK, NFE2

rs417065 (8.00E-07, [27])

0.9832

11

64,140,624

rs11231770

A/G

0.6292

PPP1R14B

SP1, SP2, ZNF263

rs645078 (2.00E-06, [25])

1.0000

  1. P/R protective/risk, RAF risk allele frequency, NR not reported, TF transcription factor, r2 r-squared value between functional variants and GWAS variants