From: Blood signatures for second stage human African trypanosomiasis: a transcriptomic approach
Sample code | Sex | Age | Disease stage | Sample type | WBC (10e4) | Tryps (10e4) | RNA (μg) | Input reads | GRCH38 mapped | Mapped >1X | % reads aligned |
---|---|---|---|---|---|---|---|---|---|---|---|
HC57 | F | 35 | II | Csf | 38 | 13 | 0.2 | 98,270,230 | 69,285,928 | 69,285,928 | 70.5 |
HC60 | F | 17 | II | Csf | 120 | 8 | 0.7 | 96,648,788 | 90,492,957 | 74,616,029 | 93.6 |
HC71 | M | 20 | II | Csf | na | 50 | 0.5 | 73,865,867 | 56,272,142 | 29,457,308 | 76.2 |
HB73 | M | 30 | I | Blood | na | 4500 | 8.1 | 123,187,268 | 93,326,386 | 23,674,401 | 75.8 |
HB71 | M | 20 | II | Blood | na | 5100 | 8 | 161,694,848 | 140,878,954 | 47,536,097 | 87.1 |
HB80 | F | 23 | I | Blood | na | 2100 | 2.6 | 149,174,871 | 45,622,196 | 6,551,610 | 30.6 |
HB81 | F | 6 | I | Blood | na | 1100 | 3.0 | 117,399,517 | 87,010,317 | 34,355,813 | 74.1 |
Control_1 | M | 12 | – | Blood | na | na | 5.3 | 348,313,772 | 294,908,395 | 73,030,586 | 84.7 |
Control_2 | M | 22 | – | Blood | na | na | 4.7 | 119,677,407 | 100,002,617 | 82,853,862 | 83.6 |
Control_3 | M | 17 | – | Blood | na | na | 7 | 87,008,230 | 71,454,798 | 28,084,167 | 82.1 |