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Table 1 Summary data on the samples collected and RNA sequencing output

From: Blood signatures for second stage human African trypanosomiasis: a transcriptomic approach

Sample code

Sex

Age

Disease stage

Sample type

WBC (10e4)

Tryps (10e4)

RNA (μg)

Input reads

GRCH38 mapped

Mapped >1X

% reads aligned

HC57

F

35

II

Csf

38

13

0.2

98,270,230

69,285,928

69,285,928

70.5

HC60

F

17

II

Csf

120

8

0.7

96,648,788

90,492,957

74,616,029

93.6

HC71

M

20

II

Csf

na

50

0.5

73,865,867

56,272,142

29,457,308

76.2

HB73

M

30

I

Blood

na

4500

8.1

123,187,268

93,326,386

23,674,401

75.8

HB71

M

20

II

Blood

na

5100

8

161,694,848

140,878,954

47,536,097

87.1

HB80

F

23

I

Blood

na

2100

2.6

149,174,871

45,622,196

6,551,610

30.6

HB81

F

6

I

Blood

na

1100

3.0

117,399,517

87,010,317

34,355,813

74.1

Control_1

M

12

Blood

na

na

5.3

348,313,772

294,908,395

73,030,586

84.7

Control_2

M

22

Blood

na

na

4.7

119,677,407

100,002,617

82,853,862

83.6

Control_3

M

17

Blood

na

na

7

87,008,230

71,454,798

28,084,167

82.1