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Table 4 Selected clinical outcomes using the results from the LipidSeq panel

From: Six years’ experience with LipidSeq: clinical and research learnings from a hybrid, targeted sequencing panel for dyslipidemias

Suspected disorder

Gene(s) of interest

LipidSeq result

Diagnosis

Number of patients

Clinically relevant outcomes

HeFH

LDLR, APOB, PCSK9

Heterozygous rare variant

HeFH

623

- Increased diagnostic certainty

- Increased likelihood of third-party coverage for PCSK9 inhibitors

HoFH

LDLR, APOB, PCSK9, LDLRAP1, ABCG5, ABCG8, LIPA

Bi-allelic rare variants in either LDLR, APOB, PCSK9, or LDLRAP1

HoFH

8

- Apheresis needs to be considered as a treatment

- Higher intensity therapies enter the picture, including lomitapide and mipomersen

- Investigational treatments include AV8.TBG.hLDLR (RGX-501) gene therapy and anti-ANGPTL3 treatments (evinacumab or IONIS-ANGPTL3-LRx)

At least one non-null LDLR allele

HoFH

3

- A partial response to evolocumab is predicted

Bi-allelic rare variants in ABCG5/ABCG8

Sitosterolemia

3

- Change of clinical diagnosis from HoFH to sitosterolemia

- Patients switched from standard HoFH treatment to a low plant diet and ezetimibe

Bi-allelic rare variants in LIPA

LALD, CESD or Wolman syndrome

3

- Change of clinical diagnosis from HoFH (or sometimes HeFH), usually in pediatric cases, to LALD [84]

LALD

LIPA

Bi-allelic rare variants in LIPA

LALD, CESD or Wolman syndrome

3

- Diagnosed patients are eligible for sebelipase (infused lysosomal acid lipase replacement)

ABL/FHBL

MTTP, APOB, SAR1B, PCSK9, ANGPTL3

Bi-allelic rare variants in MTTP, APOB or SAR1B

ABL, homozygous FHBL or CRD, respectively

6

- Initiation of lifelong therapy to avert consequences of fat-soluble vitamin deficiencies

- Fat restricted diet

- Additional clinical monitoring

Familial chylomicronemia syndrome

LPL, APOC2, APOA5, GPIHBP1, LMF1

Bi-allelic rare variants in LPL, APOC2, APOA5, GPIHBP1, or LMF1

Familial chylomicronemia syndrome

70

- Initiation of lifelong fat restricted diet

- Potential novel or investigational treatments, such as anti-apo C-III treatments (volanesorsen in Europe or AKCEA-APOCIII-LRx); anti-ANGPTL3 treatments (evinacumab or IONIS-ANGPTL3-LRx)

Bi-allelic rare variants in APOC2

APOC2 deficiency

5

- Potential for investigational apo C-II infusion

Hypoalpha-lipoproteinemia

LCAT, APOA1, ABCA1

Bi-allelic rare variants in LCAT

LCAT deficiency

2

- Monitoring of renal function

- Potential for investigational LCAT infusion (ACP-501);

Bi-allelic rare variants in APOA1 or ABCA1

Apo A-I deficiency or Tangier disease, respectively

4

- Potential for investigational apo A-I infusion (CSL-112)

Lipodystrophy

LMNA, PPARG

Heterozygous variants in LMNA or PPARG

FPLD2 or FPLD3, respectively

130

- Increased monitoring for metabolic syndrome complications

- Broad-spectrum CVD prevention initiated

- Possible leptin therapy

MODY

HNF1A, GCK

Heterozygous variants usually in HNF1A or GCK

MODY3 or MODY2, respectively

110

- Switch from insulin to diet and oral hypoglycemic agents particularly in MODY2

  1. Abbreviations: ABL abetalipoproteinemia, CESD cholesteryl ester storage disease, CRD chylomicron retention disease, CVD cardiovascular disease, FHBL hypobetalipoproteinemia, FPLD familial partial lipodystrophy, HeFH heterozygous familial hypercholesterolemia, HoFH homozygous familial hypercholesterolemia, LALD lysosomal acid lipase deficiency, MODY maturity-onset diabetes of the young