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Table 1 Pathways enriched in the dmGWAS module genes (discovery: European dataset, evaluation: Asian dataset)

From: An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palate

Pathway ID

Description

Pathway size*

# informative genes$

Adjusted p-value#

GO Biological Process

 GO:0035690

Cellular response to drug

349

12

7.2 × 10−4

 GO:0051098

Regulation of binding

367

11

9.8 × 10− 3

 GO:0048545

Response to steroid hormone

388

11

0.017

 GO:0038093

Fc receptor signaling pathway

127

7

0.017

 GO:0045104

Intermediate filament cytoskeleton organization

48

5

0.022

 GO:0045103

Intermediate filament-based process

49

5

0.024

KEGG pathway

 hsa05210

Colorectal cancer

86

7

1.7 × 10−3

 hsa05165

Human papillomavirus infection

339

12

4.2 × 10−3

 hsa05170

Human immunodeficiency virus 1 infection

212

9

0.014

 hsa05014

Amyotrophic lateral sclerosis (ALS)

51

5

0.016

 hsa04360

Axon guidance

175

8

0.024

 hsa04666

Fc gamma R-mediated phagocytosis

91

6

0.027

  1. *Pathway size: the total number of genes in the GO term or KEGG pathway
  2. $The observed number of genes from the module gene list
  3. #Bonferroni method was used to adjust p-value