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Table 5 Interactions detected by \(\widehat {IGmod}_{0}\) but not logistic regression

From: Modified entropy-based procedure detects gene-gene-interactions in unconventional genetic models

SNP pair

pos SNP 1

pos SNP 2

Submodel

MAF 1

MAF 2

p SNP 1

p SNP 2

TS pair

p value

rs1063355:rs7774434

32735692

32765556

Multi

0.37

0.44

9.68E-14

5.09E-19

0.018961

6.31E-09

rs1063355:rs9275374

32735692

32776504

Multi

0.37

0.35

9.68E-14

1.22E-56

0.020315

1.11E-09

rs1063355:rs9275388

32735692

32777062

Multi

0.37

0.34

9.68E-14

2.54E-53

0.018774

8.01E-09

rs1063355:rs9275390

32735692

32777134

Multi

0.37

0.35

9.68E-14

1.22E-56

0.020315

1.11E-09

rs1063355:rs9275393

32735692

32777417

Multi

0.37

0.35

9.68E-14

1.47E-56

0.020343

1.07E-09

rs1063355:rs9275406

32735692

32777933

Multi

0.37

0.34

9.68E-14

2.29E-56

0.020699

6.78E-10

rs1063355:rs9275407

32735692

32778015

Multi

0.37

0.34

9.68E-14

1.44E-53

0.021665

1.95E-10

rs1063355:rs9275418

32735692

32778222

Multi

0.37

0.35

9.68E-14

7.88E-57

0.020276

1.17E-09

rs1063355:rs9275424

32735692

32778554

Multi

0.37

0.35

9.68E-14

7.88E-57

0.020314

1.11E-09

rs1063355:rs9275425

32735692

32778852

Multi

0.37

0.34

9.68E-14

1.96E-52

0.019848

2.03E-09

rs1063355:rs9275427

32735692

32778893

Multi

0.37

0.35

9.68E-14

6.95E-57

0.020023

1.62E-09

rs1063355:rs9275428

32735692

32778956

Multi

0.37

0.35

9.68E-14

3.13E-56

0.019946

1.79E-09

rs1063355:rs9275439

32735692

32779499

Multi

0.37

0.34

9.68E-14

6.63E-54

0.020084

1.50E-09

rs2256175:rs9275224

31488428

32767856

Multi incompl

0.44

0.37

3.24E-15

6.52E-90

0.018158

1.76E-08

rs1055569:rs4424066

31548061

32462406

Multi incompl

0.32

0.45

3.23E-08

1.07E-66

0.018868

7.11E-09

rs1055569:rs3817973

31548061

32469089

Multi incompl

0.32

0.45

3.23E-08

1.91E-67

0.019307

4.06E-09

rs1055569:rs2076530

31548061

32471794

Multi incompl

0.32

0.45

3.23E-08

4.92E-64

0.018858

7.20E-09

rs9267911:rs3130320

32313088

32331236

Multi incompl

0.41

0.28

3.26E-36

2.10E-32

0.020101

1.46E-09

rs1055569:rs2395157

31548061

32456123

Epi

0.32

0.38

3.23E-08

2.27E-60

0.017474

4.18E-08

rs2844509:rs3817963

31618903

32476065

Epi

0.21

0.40

9.59E-19

7.20E-58

0.018005

2.13E-08

rs6941112:rs9275595

32054593

32789333

Epi

0.37

0.32

6.08E-16

9.50E-63

0.017436

4.38E-08

rs9268615:rs6903608

32510867

32536263

Epi

0.47

0.23

6.58E-44

8.39E-53

0.031001

8.87E-16

rs2395185:rs7745656

32541145

32788948

Epi

0.43

0.22

6.41E-71

1.71E-38

0.019093

5.33E-09

rs477515:rs7745656

32677669

32788948

Epi

0.42

0.22

6.18E-67

1.71E-38

0.026765

2.46E-13

rs2516049:rs7745656

32678378

32788948

Epi

0.42

0.22

1.83E-66

1.71E-38

0.026215

5.08E-13

rs382259:rs2647012

32317005

32772436

XOR

0.22

0.29

6.52E-28

2.26E-54

0.017355

4.86E-08

rs382259:rs2856717

32317005

32778286

XOR

0.22

0.29

6.52E-28

5.05E-56

0.017723

3.05E-08

rs382259:rs2858305

32317005

32778442

XOR

0.22

0.29

6.52E-28

5.05E-56

0.017723

3.05E-08

rs382259:rs9275572

32317005

32786977

XOR

0.22

0.31

6.52E-28

2.86E-59

0.018208

1.65E-08

rs412657:rs405875

32319063

32323166

Other

0.35

0.50

2.94E-42

5.21E-21

0.017883

2.49E-08

rs412657:rs3115573

32319063

32326821

Other

0.35

0.50

2.94E-42

2.44E-20

0.017684

3.20E-08

  1. Position (pos) of SNPs as base pairs on chromosome 6, submodel of interaction as detailed in Table 6, minor allele frequencies (MAF), p SNP 1 and p SNP 2 as p-values from 1st order calculation, TS pair as value of the test statistic from 2nd order calculation, p-value as result from 2nd order calculation