Table 2 Information of bacterial strains used in this study
Strain | Accession number | Pathogenicity/Sourcea | Reference |
|---|---|---|---|
E.coli MG1655 | NC_000913 | Non pathogenic | [36] |
E.coli H10407 | NC_017633 | ETEC | [37] |
E.coli P12b | NC_017663 | Non-pathogenic | [38] |
E.coli UMNK88 | NC_017641 | Enterotoxigenic E. coli (ETEC) | |
E. coli REL606 | CP000819 | Non-pathogenic | |
E. coli ATCC 8739 | NC_010468 | ||
E. coli O78 | NC_020163 | APEC | [39] |
E. coli E24377A | NC_009801 | ETEC | |
E. coli 11,128 | NC_013364 | STEC/EHEC | [40] |
E. coli 12,009 | NC_013353 | STEC/EHEC | [40] |
E. coli SE11 | NC_011415 | Non pathogenic | [41] |
E.coli IAI1 | NC_011741 | Non pathogenic | |
E.coli 2009EL-2050 | NC_018650 | EAggEC-EHEC | [42] |
E.coli LY180 | NC_022364 | [43] | |
E.coli NA114 | NC_017644 | ExPEC (multidrug-resistant UPEC) | [44] |
E.coli SE15 | NC_013654 | Non-pathogenic | [45] |
E.coli E2348/69 | NC_011601 | EPEC | [46] |
E.coli 536 | NC_008253 | ExPEC (UPEC) | [47] |
E.coli UTI89 | NC_007946 | ExPEC (UPEC) | [48] |
E.coli S88 | NC_011742 | ExPEC (neonatal meningitis) | [49] |
E.coli LF82 | NC_011993 | AIEC | |
E.coli ED1a | NC_011745 | Non-pathogenic | |
E.coli CFT073 | NC_004431 | ExPEC (UPEC) | [50] |
E.coli UMN026 | NC_011751 | ExPEC (UPEC) | |
E.coli 042 | NC_017626 | EAEC | [51] |
E.coli CE10 | NC_017646 | ExPEC (neonatal meningitis) | [52] |
E.coli SMS-3-5 | NC_010498 | Multi-resistant | |
E.coli O55 RM12579 | NC_017656 | Atypical EPEC (aEPEC) | |
E.coli O55 CB9615 | NC_013941 | aEPEC | [53] |
E.coli O157 Xuzhou21 | NC_017906 | STEC/EHEC | [54] |
E.coli O157 Sakai | NC_002695 | STEC/EHEC | [55] |
E.coli O157 EDL933 | NC_002655 | EHEC | [56] |
Sh. boydii Sb227 | CP000036 | Dysentery | [57] |
Sh. sonnei 53G | NC_016822 | Dysentery | |
Sh. flexneri 58,401 | NC_008258 | Dysentery | [58] |
Sh. flexneri 2a 301 | AE005674 | Dysentery | |
Sh. dysenteriae Sd197 | NC_007606 | Dysentery | [57] |
S. heidelberg B182 | NC_017623 | Salmonella food poisoning | [59] |
S. typhimurium LT2 | NC_003197 | Gastroenteritis | [60] |
S. paratyphi B SPB7 | NC_010102 | Paratyphoid fever | |
S. paratyphi C RKS4594 | CP000857 | Paratyphoid fever | [35] |
S. choleraesuis SC-B67 | NC_006905 | Systemic infections | [61] |
S. dublin CT_02021853 | NC_011205 | Systemic infections | [62] |
S. enteritidis P125109 | NC_011294 | Gastroenteritis | [63] |
S. pullorum RKS5078 | NC_016831 | Chicken dysentery | [34] |
S. gallinarum 287/91 | NC_011274 | Chicken typhoid fever | [63] |
S. paratyphi A ATCC 9150 | NC_006511 | Paratyphoid fever | [64] |
S. typhi Ty2 | AE014613 | Typhoid fever | [65] |
S. bongori NCTC 12419 | NC_015761 | Pathogenic for cold-blooded animals | |
ccpm3961(AN61) | LLYC00000000 | WZW, a healthy preschooler | This work |
ccpm3962(AN62) | LLYD01000000 | WZW, a healthy preschooler | This work |
ccpm5062(AY62) | LLYE00000000 | ZGQ, a healthy university student | This work |
ccpm5063(AY63) | LLYF00000000 | ZGQ, a healthy university student | This work |
ccpm5064(AY64) | LLYG00000000 | ZGQ, a healthy university student | This work |
ccpm5065(AY65) | LLYH00000000 | ZGQ, a healthy university student | This work |
ccpm5069(AY69) | LLYI00000000 | ZGQ, a healthy university student | This work |
ccpm5071(AY71) | LLYJ00000000 | ZGQ, a healthy university student | This work |
ccpm5171(AZ71) | LLYK00000000 | TZL, a healthy university student | This work |
ccpm5172(AZ72) | LLYL00000000 | TZL, a healthy university student | This work |
ccpm5174(AZ74) | LLYM00000000 | TZL, a healthy university student | This work |
ccpm5175(AZ75) | LLYN00000000 | TZL, a healthy university student | This work |
ccpm5176(AZ76) | LLYO00000000 | TZL, a healthy university student | This work |
ccpm5177(AZ77) | LLYP00000000 | TZL, a healthy university student | This work |
ccpm5179(AZ79) | LLYQ00000000 | TZL, a healthy university student | This work |
BAMA0321 | NPIO00000000 | BMS9, a healthy longevity senior | This work |
BAMA0315 | NPIP00000000 | BMS9, a healthy longevity senior | This work |
BAMA0374 | NPIQ00000000 | BMS11, a healthy longevity senior | This work |
BAMA0361 | NPIR00000000 | BMS11, a healthy longevity senior | This work |
BAMA0397 | NPIS00000000 | BMS15, a healthy longevity senior | This work |
ccpm6195 | NQIN00000000 | CRC-EC1, a CRC patient | This work |
ccpm6201 | NQIO00000000 | CRC-EC1, a CRC patient | This work |
ccpm6207 | NQIP00000000 | CRC-EC2, a CRC patient | This work |
ccpm6219 | NPIM00000000 | CRC-EC3, a CRC patient | This work |
ccpm6220 | NPIN00000000 | CRC-EC3, a CRC patient | This work |