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Table 2 Information of bacterial strains used in this study

From: E. coli diversity: low in colorectal cancer

StrainAccession numberPathogenicity/SourceaReference
E.coli MG1655NC_000913Non pathogenic[36]
E.coli H10407NC_017633ETEC[37]
E.coli P12bNC_017663Non-pathogenic[38]
E.coli UMNK88NC_017641Enterotoxigenic E. coli (ETEC)https://www.ncbi.nlm.nih.gov/nuccore/NC_017641
E. coli REL606CP000819Non-pathogenichttps://www.ncbi.nlm.nih.gov/nuccore/CP000819
E. coli ATCC 8739NC_010468 https://www.ncbi.nlm.nih.gov/nuccore/NC_010468
E. coli O78NC_020163APEC[39]
E. coli E24377ANC_009801ETEChttps://www.ncbi.nlm.nih.gov/nuccore/NC_009801
E. coli 11,128NC_013364STEC/EHEC[40]
E. coli 12,009NC_013353STEC/EHEC[40]
E. coli SE11NC_011415Non pathogenic[41]
E.coli IAI1NC_011741Non pathogenichttps://www.ncbi.nlm.nih.gov/nuccore/NC_011741
E.coli 2009EL-2050NC_018650EAggEC-EHEC[42]
E.coli LY180NC_022364 [43]
E.coli NA114NC_017644ExPEC (multidrug-resistant UPEC)[44]
E.coli SE15NC_013654Non-pathogenic[45]
E.coli E2348/69NC_011601EPEC[46]
E.coli 536NC_008253ExPEC (UPEC)[47]
E.coli UTI89NC_007946ExPEC (UPEC)[48]
E.coli S88NC_011742ExPEC (neonatal meningitis)[49]
E.coli LF82NC_011993AIEChttps://www.ncbi.nlm.nih.gov/nuccore/NC_011993
E.coli ED1aNC_011745Non-pathogenichttps://www.ncbi.nlm.nih.gov/nuccore/NC_011745
E.coli CFT073NC_004431ExPEC (UPEC)[50]
E.coli UMN026NC_011751ExPEC (UPEC)https://www.ncbi.nlm.nih.gov/nuccore/NC_011751
E.coli 042NC_017626EAEC[51]
E.coli CE10NC_017646ExPEC (neonatal meningitis)[52]
E.coli SMS-3-5NC_010498Multi-resistanthttps://www.ncbi.nlm.nih.gov/nuccore/NC_010498
E.coli O55 RM12579NC_017656Atypical EPEC (aEPEC)https://www.ncbi.nlm.nih.gov/nuccore/NC_017656
E.coli O55 CB9615NC_013941aEPEC[53]
E.coli O157 Xuzhou21NC_017906STEC/EHEC[54]
E.coli O157 SakaiNC_002695STEC/EHEC[55]
E.coli O157 EDL933NC_002655EHEC[56]
Sh. boydii Sb227CP000036Dysentery[57]
Sh. sonnei 53GNC_016822Dysenteryhttps://www.ncbi.nlm.nih.gov/nuccore/NC_016822
Sh. flexneri 58,401NC_008258Dysentery[58]
Sh. flexneri 2a 301AE005674Dysenteryhttps://www.ncbi.nlm.nih.gov/nuccore/AE005674
Sh. dysenteriae Sd197NC_007606Dysentery[57]
S. heidelberg B182NC_017623Salmonella food poisoning[59]
S. typhimurium LT2NC_003197Gastroenteritis[60]
S. paratyphi B SPB7NC_010102Paratyphoid feverhttps://www.ncbi.nlm.nih.gov/nuccore/NC_010102
S. paratyphi C RKS4594CP000857Paratyphoid fever[35]
S. choleraesuis SC-B67NC_006905Systemic infections[61]
S. dublin CT_02021853NC_011205Systemic infections[62]
S. enteritidis P125109NC_011294Gastroenteritis[63]
S. pullorum RKS5078NC_016831Chicken dysentery[34]
S. gallinarum 287/91NC_011274Chicken typhoid fever[63]
S. paratyphi A ATCC 9150NC_006511Paratyphoid fever[64]
S. typhi Ty2AE014613Typhoid fever[65]
S. bongori NCTC 12419NC_015761Pathogenic for cold-blooded animalshttps://www.ncbi.nlm.nih.gov/nuccore/NC_015761
ccpm3961(AN61)LLYC00000000WZW, a healthy preschoolerThis work
ccpm3962(AN62)LLYD01000000WZW, a healthy preschoolerThis work
ccpm5062(AY62)LLYE00000000ZGQ, a healthy university studentThis work
ccpm5063(AY63)LLYF00000000ZGQ, a healthy university studentThis work
ccpm5064(AY64)LLYG00000000ZGQ, a healthy university studentThis work
ccpm5065(AY65)LLYH00000000ZGQ, a healthy university studentThis work
ccpm5069(AY69)LLYI00000000ZGQ, a healthy university studentThis work
ccpm5071(AY71)LLYJ00000000ZGQ, a healthy university studentThis work
ccpm5171(AZ71)LLYK00000000TZL, a healthy university studentThis work
ccpm5172(AZ72)LLYL00000000TZL, a healthy university studentThis work
ccpm5174(AZ74)LLYM00000000TZL, a healthy university studentThis work
ccpm5175(AZ75)LLYN00000000TZL, a healthy university studentThis work
ccpm5176(AZ76)LLYO00000000TZL, a healthy university studentThis work
ccpm5177(AZ77)LLYP00000000TZL, a healthy university studentThis work
ccpm5179(AZ79)LLYQ00000000TZL, a healthy university studentThis work
BAMA0321NPIO00000000BMS9, a healthy longevity seniorThis work
BAMA0315NPIP00000000BMS9, a healthy longevity seniorThis work
BAMA0374NPIQ00000000BMS11, a healthy longevity seniorThis work
BAMA0361NPIR00000000BMS11, a healthy longevity seniorThis work
BAMA0397NPIS00000000BMS15, a healthy longevity seniorThis work
ccpm6195NQIN00000000CRC-EC1, a CRC patientThis work
ccpm6201NQIO00000000CRC-EC1, a CRC patientThis work
ccpm6207NQIP00000000CRC-EC2, a CRC patientThis work
ccpm6219NPIM00000000CRC-EC3, a CRC patientThis work
ccpm6220NPIN00000000CRC-EC3, a CRC patientThis work
  1. a “Pathogenicity” for the reference E. coli complex and Salmonella strains, “source” for the 25 E. coli strains isolated for this study