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Table 5 Validation of microarray gene expression data by real-time polymerase chain reaction (qPCR) analysis

From: Gene networks and transcriptional regulators associated with liver cancer development and progression

Comparison

Gene

Microarrays

qPCR

Mean FC

P

Mean FC

P

GE1-HCC versus NT

MKI67

1.77

0.092

4.92

2.30E-04

HJURP

1.27

0.32

15.84

2.60E-05

KPNA2

1.28

0.253

0.96

0.756

XPOT

1.02

0.949

0.78

0.041

HNF1A-AS1

3.25

0.007

3.19

0.019

H19

0.33

0.006

0.13

0.006

SNAR-A3

1.08

0.813

0.61

0.03

SNAR-B2

0.58

0.305

0.26

0.01

SNAR-H

0.68

0.427

0.92

0.752

GE2-HCC versus NT

MKI67

12.96

0

36.64

5.30E-05

HJURP

7.17

0

25.91

1.10E-05

KPNA2

2.63

0

12.81

0.004

XPOT

2.54

0.001

2.26

0.001

HNF1A-AS1

5.27

0

7.05

0.026

H19

4.58

0.002

3.1

0.002

SNAR-A3

7.72

0

24.2

0.002

SNAR-B2

15.83

0

47.5

0.001

SNAR-H

14.05

0

29.55

0.001

GE2-HCC versus GE1-HCC

MKI67

7.32

0

7.52

8.40E-05

HJURP

5.63

0

1.68

0.013

KPNA2

2.05

0.001

13.42

0.001

XPOT

2.5

0.003

2.92

1.20E-04

HNF1A-AS1

1.65

0.204

2.21

0.026

H19

14.01

0

23.81

0.002

SNAR-A3

8.33

0

39.58

0.002

SNAR-B2

27.26

0

181.02

0.001

SNAR-H

20.66

0

32.22

0

  1. FC fold change, HCC hepatocellular carcinoma, NT non-tumourous