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Table 2 Cistrome dataset information

From: Broadening our understanding of genetic risk for scleroderma/systemic sclerosis by querying the chromatin architecture surrounding the risk haplotypes

Publication

Cell type

Cell population

Factor

GEO accession

Kim DE, 2017

Fibroblast

Primary dermal fibroblasts

H3K27ac

GSM2151910

Adoue V, 2014

Fibroblast

Fibroblast primary cell line

H3K4me1

GSM1435528

Adoue V, 2014

Fibroblast

Fibroblast primary cell line

H3K4me3

GSM1435529

Andersson R, Nature 2014

B Lymphocyte

CD19+

H3K27ac

GSM998997

Andersson R, Nature 2014

B Lymphocyte

CD19+

H3K4me1

GSM998994

Bernstein BE, Nat. Biotechnol 2010

B Lymphocyte

CD19+

H3K4me3

GSM1027300

Andersson R, Nature 2014

T Lymphocyte

CD4+ (strain naïve)

H3K27ac

GSM999004

Andersson R, Nature 2014

T Lymphocyte

CD4+ (strain naïve)

H3K4me1

GSM999003

LaMere SA, Genes Immun 2016

T Lymphocyte

CD4+ (strain naïve)

H3K4me3

GSM1888744

ENCODE Project Consortium, Nature 2012

Endothelial Cell

HUVEC

H3K27ac

GSM733691

ENCODE Project Consortium, Nature 2012

Endothelial Cell

HUVEC

H3K4me1

GSM733690

ENCODE Project Consortium, Nature 2012

Endothelial Cell

HUVEC

H3K4me3

GSM733673

ENCODE Project Consortium, Nature 2012

Monocyte

CD14+

H3K27ac

GSM1003559

ENCODE Project Consortium, Nature 2012

Monocyte

CD14+

H3K4me1

GSM1003535

ENCODE Project Consortium, Nature 2012

Monocyte

CD14+

H3K4me3

GSM1003536