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Fig. 3 | BMC Medical Genomics

Fig. 3

From: In silico analysis suggests disruption of interactions between HAMP from hepatocytes and SLC40A1 from macrophages in hepatocellular carcinoma

Fig. 3

Identification of hepatocytes using the Hep index. a UMAP plot of cells from para-carcinoma tissue. b Heatmap of expression of known cell-type markers in the UMAP plot. c Distribution of the Hep index of all cells from para-carcinoma tissue. d Comparison of hepatocytes identified using cell-type markers and the Hep index. We counted cells with Hep index above 0.5, which were those in clusters 6, 14, and 17 of the UMAP plot, and shared cells between them in each para-carcinoma tissue sample. HCC03 to HCC10 represent patient codes. N indicates that three samples are from para-carcinoma tissue

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