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Table 2 Alleles undergoing significant somatic selection in cancers with q-value less than 0.1

From: Exonic variants undergoing allele-specific selection in cancers

Cancer Type

RS id

Gene

Chromosome

Position

Ref

Alt

MAF

Function

\({\pi }_{i}\)

P values

LUAD

rs6790837

HEG1

chr3

124,732,618

A

G

0.441

Nonsynonymous SNV

0.272

5.06E-06

rs35659744

MAP3K6

chr1

27,687,466

G

T

0.122

Nonsynonymous SNV

0.293

1.01E-05

rs17851629

GTF2IRD1

chr7

73,932,560

A

G

0.237

Synonymous SNV

0.297

1.39E-05

rs12683

MYDGF

chr19

4,658,047

A

G

0.166

Synonymous SNV

0.297

1.39E-05

rs4727323

PDK4

chr7

95,216,394

T

G

0.459

Synonymous SNV

0.305

2.40E-05

rs17104362

RBM27

chr5

145,650,597

A

G

0.162

Synonymous SNV

0.310

3.04E-05

rs73732050

C6orf89

chr6

36,867,376

C

T

0.00579

Synonymous SNV

0.312

3.29E-05

rs1052690

IDNK

chr9

86,258,685

A

C

0.0972

Nonsynonymous SNV

0.316

4.93E-05

rs2233188

MLLT1

chr19

6,230,692

G

A

0.0705

Synonymous SNV

0.317

4.93E-05

rs3730463

POLL

chr10

103,344,589

T

G

0.0583

Nonsynonymous SNV

0.319

5.44E-05

rs10401174

CNN1

chr19

11,660,538

G

T

0.132

Synonymous SNV

0.320

6.20E-05

rs7865299

VAV2

chr9

136,662,928

A

G

0.261

Synonymous SNV

0.321

6.58E-05

rs7820872

RAB11FIP1

chr8

37,728,019

T

G

0.199

Synonymous SNV

0.322

6.70E-05

rs34546634

ACAN

chr15

89,401,814

G

A

0.0274

Nonsynonymous SNV

0.678

6.70E-05

rs12204826

RSPH3

chr6

159,398,803

C

T

0.0142

Nonsynonymous SNV

0.680

6.20E-05

rs144579994

MCEMP1

chr19

7,743,399

C

T

0.00539

Synonymous SNV

0.680

5.56E-05

rs138939062

TMEM184B

chr22

38,617,704

G

C

0.00799

Synonymous SNV

0.682

5.19E-05

rs140442228

TJP2

chr9

71,863,038

C

T

0.00699

Synonymous SNV

0.683

5.19E-05

rs11996801

EPHX2

chr8

27,364,442

A

C

0.0601

synonymous snv

0.686

4.55E-05

rs11788754

TJP2

chr9

71,861,685

G

A

0.00699

Synonymous SNV

0.691

3.04E-05

rs11542503

SYT5

chr19

55,687,413

C

T

0.0401

Nonsynonymous SNV

0.693

2.66E-05

BRCA

rs61555831

SLCO2B1

chr11

74,907,721

C

T

0.0727

Synonymous snv

0.705

1.02E-05

rs60209570

WSCD1

chr17

5,991,337

A

C

0.025

Nonsynonymous SNV

0.292

8.88E-06

rs61739501

SMG6

chr17

2,203,225

C

T

0.0118

Synonymous SNV

0.732

5.08E-06

rs201311722

TMEM161B

chr5

87,516,503

A

C

0.05

Nonsynonymous SNV

0.274

5.08E-06

rs200333134

DCDC2B

chr1

32,674,703

T

G

0.216

Synonymous SNV

0.282

5.08E-06