From: Exonic variants undergoing allele-specific selection in cancers
Cancer Type | RS id | Gene | Chromosome | Position | Ref | Alt | MAF | Function | \({\pi }_{i}\) | P values | |
---|---|---|---|---|---|---|---|---|---|---|---|
LUAD | rs6790837 | HEG1 | chr3 | 124,732,618 | A | G | 0.441 | Nonsynonymous SNV | 0.272 | 5.06E-06 | |
rs35659744 | MAP3K6 | chr1 | 27,687,466 | G | T | 0.122 | Nonsynonymous SNV | 0.293 | 1.01E-05 | ||
rs17851629 | GTF2IRD1 | chr7 | 73,932,560 | A | G | 0.237 | Synonymous SNV | 0.297 | 1.39E-05 | ||
rs12683 | MYDGF | chr19 | 4,658,047 | A | G | 0.166 | Synonymous SNV | 0.297 | 1.39E-05 | ||
rs4727323 | PDK4 | chr7 | 95,216,394 | T | G | 0.459 | Synonymous SNV | 0.305 | 2.40E-05 | ||
rs17104362 | RBM27 | chr5 | 145,650,597 | A | G | 0.162 | Synonymous SNV | 0.310 | 3.04E-05 | ||
rs73732050 | C6orf89 | chr6 | 36,867,376 | C | T | 0.00579 | Synonymous SNV | 0.312 | 3.29E-05 | ||
rs1052690 | IDNK | chr9 | 86,258,685 | A | C | 0.0972 | Nonsynonymous SNV | 0.316 | 4.93E-05 | ||
rs2233188 | MLLT1 | chr19 | 6,230,692 | G | A | 0.0705 | Synonymous SNV | 0.317 | 4.93E-05 | ||
rs3730463 | POLL | chr10 | 103,344,589 | T | G | 0.0583 | Nonsynonymous SNV | 0.319 | 5.44E-05 | ||
rs10401174 | CNN1 | chr19 | 11,660,538 | G | T | 0.132 | Synonymous SNV | 0.320 | 6.20E-05 | ||
rs7865299 | VAV2 | chr9 | 136,662,928 | A | G | 0.261 | Synonymous SNV | 0.321 | 6.58E-05 | ||
rs7820872 | RAB11FIP1 | chr8 | 37,728,019 | T | G | 0.199 | Synonymous SNV | 0.322 | 6.70E-05 | ||
rs34546634 | ACAN | chr15 | 89,401,814 | G | A | 0.0274 | Nonsynonymous SNV | 0.678 | 6.70E-05 | ||
rs12204826 | RSPH3 | chr6 | 159,398,803 | C | T | 0.0142 | Nonsynonymous SNV | 0.680 | 6.20E-05 | ||
rs144579994 | MCEMP1 | chr19 | 7,743,399 | C | T | 0.00539 | Synonymous SNV | 0.680 | 5.56E-05 | ||
rs138939062 | TMEM184B | chr22 | 38,617,704 | G | C | 0.00799 | Synonymous SNV | 0.682 | 5.19E-05 | ||
rs140442228 | TJP2 | chr9 | 71,863,038 | C | T | 0.00699 | Synonymous SNV | 0.683 | 5.19E-05 | ||
rs11996801 | EPHX2 | chr8 | 27,364,442 | A | C | 0.0601 | synonymous snv | 0.686 | 4.55E-05 | ||
rs11788754 | TJP2 | chr9 | 71,861,685 | G | A | 0.00699 | Synonymous SNV | 0.691 | 3.04E-05 | ||
rs11542503 | SYT5 | chr19 | 55,687,413 | C | T | 0.0401 | Nonsynonymous SNV | 0.693 | 2.66E-05 | ||
BRCA | rs61555831 | SLCO2B1 | chr11 | 74,907,721 | C | T | 0.0727 | Synonymous snv | 0.705 | 1.02E-05 | |
rs60209570 | WSCD1 | chr17 | 5,991,337 | A | C | 0.025 | Nonsynonymous SNV | 0.292 | 8.88E-06 | ||
rs61739501 | SMG6 | chr17 | 2,203,225 | C | T | 0.0118 | Synonymous SNV | 0.732 | 5.08E-06 | ||
rs201311722 | TMEM161B | chr5 | 87,516,503 | A | C | 0.05 | Nonsynonymous SNV | 0.274 | 5.08E-06 | ||
rs200333134 | DCDC2B | chr1 | 32,674,703 | T | G | 0.216 | Synonymous SNV | 0.282 | 5.08E-06 |