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Table 2 CD versus Controls DEncRNAs

From: Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease

Name Ileum Log2FC Rectum Log2FC Ileum P value Rectum P value Significant
AC007228.9 1.296 1.457 1.24E−28 1.84E−26 Both
AC159540.1 1.001 1.095 3.80E−21 1.82E−24 Both
BCYRN1 − 1.068 − 0.691 7.34E−13 7.82E−06 Both
FAM225A 2.541 1.498 9.97E−41 1.41E−15 Both
MIR1244-2 1.374 1.058 1.95E−61 1.30E−30 Both
MIR1244-3 1.626 1.343 3.34E−58 1.81E−30 Both
MIR1244-4 1.586 1.199 1.15E−48 1.05E−27 Both
OVCH1-AS1 1.553 1.399 4.51E−71 9.01E−47 Both
RF00019 − 1.22 − 0.677 2.44E−17 6.35E−08 Both
RN7SL2 − 1.564 − 1.371 3.01E−47 1.81E−33 Both
RP11-143J24.1 1.863 1.625 1.59E−58 7.05E−38 Both
RP11-184E9.1 1.876 1.681 7.55E−51 5.40E−33 Both
RP11-566K8.2 − 1.096 − 0.521 9.39E−14 6.58E−07 Both
RP11-734K23.9 1.459 1.391 6.63E−34 1.67E−29 Both
RP11-79H23.3 1.16 1.503 4.32E−13 3.61E−14 Both
RP11-88H9.2 1.024 1.311 2.07E−12 1.95E−09 Both
RP11-90D4.2 1.63 1.036 5.87E−18 5.75E−11 Both
RN7SKP22 − 1.146 0.61 2.31E−11 3.17E−01 Both
AC007126.1 − 1.543 0.347 6.61E−17 4.94E−01 Ileal
AC016735.2 2.725 0.911 1.16E−15 6.08E−03 Ileal
AC017002.1 1.372 1.105 1.51E−22 6.09E−08 Ileal
AC023590.1 − 1.1 − 0.38 2.15E−13 1.12E−02 Ileal
AC068491.1 1.227 0.716 2.08E−25 1.39E−09 Ileal
AC114730.3 1.214 0.029 1.27E−05 7.37E−01 Ileal
AC133644.2 1.437 0.882 4.32E−29 5.63E−08 Ileal
AFAP1-AS1 1.036 0.55 7.10E−05 5.06E−04 Ileal
AP001046.5 1.392 0.863 5.35E−20 1.25E−07 Ileal
B3GALT5-AS1 1.123 − 0.39 4.89E−05 1.51E−02 Ileal
BLACAT1 1.007 0.549 9.38E−15 7.79E−04 Ileal
C12orf36 2.123 − 0.294 9.81E−14 2.86E−02 Ileal
C12orf61 1.062 0.495 9.32E−17 4.10E−06 Ileal
CDKN2B-AS1 − 1.023 − 0.071 1.28E−07 6.17E−01 Ileal
CTA-384D8.36 1.158 0.584 6.26E−19 1.15E−06 Ileal
CTB-127C13.1 − 1.135 1.492 2.87E−10 1.76E−03 Ileal
CTB-43E15.3 1.644 0.979 2.23E−13 3.68E−05 Ileal
CTB-61M7.2 4.619 2.916 2.63E−26 4.20E−10 Ileal
CTC-210G5.1 − 1.106 0.74 9.33E−09 5.42E−02 Ileal
CTC-490G23.2 3.255 − 0.056 5.64E−13 7.97E−01 Ileal
CTC-558O2.1 − 1.068 − 0.303 1.73E−11 3.84E−03 Ileal
CYTOR 1.512 0.979 1.57E−33 2.22E−17 Ileal
FAM225B 2.054 1.277 1.59E−28 1.75E−13 Ileal
HOTTIP 2.857 − 0.206 9.01E−08 1.80E−02 Ileal
HOXA11-AS1 2.247 − 0.056 1.06E−11 4.95E−01 Ileal
LINC00346 1.549 0.269 1.22E−20 3.39E−02 Ileal
LINC00479 − 1.255 − 0.295 2.71E−11 2.26E−01 Ileal
LINC01127 2.775 1.017 3.05E−25 7.24E−06 Ileal
LINC01272 2.847 0.756 2.02E−27 3.48E−05 Ileal
LINC01595 − 1.45 − 0.295 3.53E−06 4.40E−01 Ileal
MAP3K20-AS1 3.232 0.226 4.36E−24 2.03E−01 Ileal
NCRNA00114 1.273 0.73 6.18E−15 2.41E−05 Ileal
RN7SKP22 − 1.146 0.61 2.31E−11 3.17E−01 Ileal
RP11-109E12.1 1.913 1.492 2.76E−38 2.34E−28 Ileal
RP11-115D19.1 2.375 1.497 1.35E−18 3.75E−06 Ileal
RP11-116O18.1 − 2.224 1.449 4.06E−24 1.00E−03 Ileal
RP11-1334A24.6 1.019 0.835 2.80E−11 8.02E−08 Ileal
RP11-138C24.1 3.41 1.76 4.40E−17 1.41E−04 Ileal
RP11-1399P15.1 1.451 0.609 1.21E−17 1.92E−06 Ileal
RP11-178A10.1 1.832 0.461 6.06E−15 1.04E−02 Ileal
RP11-17H4.2 1.652 0.601 1.46E−19 7.40E−05 Ileal
RP11-203B7.2 − 1.435 − 0.392 7.11E−10 1.48E−01 Ileal
RP11-208N14.5 2.608 0.084 6.35E−17 5.53E−01 Ileal
RP11-213H15.3 3.262 1.333 3.58E−20 1.09E−04 Ileal
RP11-21C4.1 1.405 0.379 8.97E−15 3.49E−02 Ileal
RP11-304L19.3 1.042 0.476 2.03E−19 2.27E−07 Ileal
RP11-354P11.4 − 1.425 0.451 3.51E−15 3.90E−01 Ileal
RP11-380P13.1 − 1.079 − 0.411 4.27E−08 2.59E−02 Ileal
RP11-418I22.2 − 1.246 − 0.108 5.65E−11 6.75E−01 Ileal
RP11-419K12.2 1.874 0.697 2.15E−10 1.40E−02 Ileal
RP11-44K6.2 1.547 2.142 2.10E−12 2.91E−09 Ileal
RP11-478K15.6 − 1.52 − 0.382 7.82E−20 1.68E−02 Ileal
RP11-492E3.2 1.343 0.464 1.52E−17 5.09E−05 Ileal
RP11-515O17.2 − 1.001 − 0.028 4.70E−06 9.50E−01 Ileal
RP11-536O18.2 2.877 0.94 9.07E−24 1.90E−05 Ileal
RP11-638I2.9 1.214 0.598 9.50E−13 4.80E−04 Ileal
RP11-701P16.5 4.053 2.009 1.03E−20 2.54E−08 Ileal
RP11-806H10.4 1.168 0.851 3.83E−11 2.29E−06 Ileal
RP11-806L2.3 1.188 0.946 8.13E−19 2.35E−11 Ileal
RP11-817J15.3 − 1.166 0.673 1.32E−04 2.92E−02 Ileal
RP11-875H7.4 1.538 0.153 6.28E−18 2.30E−01 Ileal
RP11-94C24.13 − 1.125 − 0.369 4.25E−15 6.62E−03 Ileal
RP11-96M12.1 − 1.407 0.765 6.75E−10 7.57E−02 Ileal
RP13-497K6.1 − 1.08 − 0.408 1.97E−08 2.72E−02 Ileal
RP3-368B9.2 − 1.153 0.178 2.21E−07 6.30E−01 Ileal
RP4-724E13.2 − 1.297 − 0.66 1.26E−21 7.49E−08 Ileal
RP5-899E9.1 1.52 0.498 6.13E−23 2.26E−04 Ileal
SATB2-AS1 1.165 − 0.203 7.02E−07 2.12E−02 Ileal
SH3PXD2A-AS1 1.383 0.293 1.89E−11 2.30E−02 Ileal
SNHG9 1.229 0.959 8.91E−39 8.48E−18 Ileal
UCA1 1.151 0.296 1.51E−07 1.76E−01 Ileal
XXyac-YM21GA2.7 − 1.373 − 0.197 4.11E−12 3.64E−01 Ileal
RP11-116O18.1 − 2.224 1.449 4.06E−24 1.00E−03 Ileal
AC007126.1 − 1.543 0.347 6.61E−17 4.94E−01 Ileal
RP11-354P11.4 − 1.425 0.451 3.51E−15 3.90E−01 Ileal
RP11-96M12.1 − 1.407 0.765 6.75E−10 7.57E−02 Ileal
RP11-817J15.3 − 1.166 0.673 1.32E−04 2.92E−02 Ileal
RP3-368B9.2 − 1.153 0.178 2.21E−07 6.30E−01 Ileal
CTB-127C13.1 − 1.135 1.492 2.87E−10 1.76E−03 Ileal
CTC-210G5.1 − 1.106 0.74 9.33E−09 5.42E−02 Ileal
B3GALT5-AS1 1.123 − 0.39 4.89E−05 1.51E−02 Ileal
SATB2-AS1 1.165 − 0.203 7.02E−07 2.12E−02 Ileal
C12orf36 2.123 − 0.294 9.81E−14 2.86E−02 Ileal
HOXA11-AS1 2.247 − 0.056 1.06E−11 4.95E−01 Ileal
HOTTIP 2.857 − 0.206 9.01E−08 1.80E−02 Ileal
AC005392.1 3.255 − 0.056 5.64E−13 7.97E−01 Ileal
AC066593.1 0.146 − 0.545 5.63E−01 1.26E−03 Rectal
AC104135.4 0.894 1.445 7.86E−05 4.94E−07 Rectal
AP000345.1 − 0.779 − 0.765 5.37E−04 5.99E−04 Rectal
CTC-425O23.2 − 0.853 − 0.601 1.27E−13 4.39E−07 Rectal
CTD-2561J22.4 − 0.974 − 0.62 1.20E−11 2.92E−06 Rectal
DIO3OS − 0.629 − 0.531 3.40E−08 8.76E−05 Rectal
HOXD-AS2 1.377 − 0.54 6.44E−09 1.51E−03 Rectal
LINC00923 − 0.401 − 0.553 7.70E−04 9.25E−06 Rectal
LL22NC03-2H8.5 − 0.897 − 0.692 9.65E−12 1.84E−11 Rectal
MIR145 − 0.501 − 0.612 3.12E−07 1.05E−06 Rectal
MIR3936 − 0.811 − 0.548 3.62E−16 1.42E−07 Rectal
MIR429 − 0.617 − 0.515 1.74E−07 1.06E−09 Rectal
RN7SKP127 − 1.108 − 0.656 1.07E−06 3.13E−04 Rectal
RN7SL3 − 0.663 − 0.875 4.39E−06 5.20E−08 Rectal
RP11-117B7.1 0.758 1.084 1.07E−19 1.41E−16 Rectal
RP11-125B21.2 0.268 − 0.733 2.21E−01 2.00E−05 Rectal
RP11-13K12.5 0.152 − 0.609 4.87E−01 1.95E−04 Rectal
RP11-283C24.1 1.872 1.69 1.26E−27 1.42E−19 Rectal
RP11-462G2.1 0.578 1.043 4.76E−04 5.23E−09 Rectal
RP11-527H14.2 0.834 1.34 3.74E−08 2.54E−09 Rectal
RP13-225O21.2 − 0.876 − 0.619 4.31E−14 2.75E−07 Rectal
RP13-516M14.10 − 0.678 − 0.531 2.53E−25 1.48E−14 Rectal
RP5-965G21.4 0.444 − 0.516 8.04E−03 2.26E−08 Rectal
U62631.5 − 0.901 − 0.541 3.15E−06 3.35E−03 Rectal
HOXD-AS2 1.377 − 0.54 6.44E−09 1.51E−03 Rectal
  1. In total, there were 89 and 41 CD specific DE ncRNAs were identified in ileal alone and rectal alone biopsies, respectively. Significant column represents whether the CD specific ncRNA is significant in Ileal or rectal or in both