Table 2 Parental haplotypes phasing data
Family | Sample | Gene | Phase block across target region | Phasing block size(kb) | No. of SNPs across the block |
|---|---|---|---|---|---|
F01 | mat | HBB | chr11:4249489-6238960 | 1989.5 | 2367 |
pat | HBB | chr11:4269280-5761797 | 1492.5 | 1469 | |
F02 | mat | HBB | chr11:4366798-6246383 | 1879.6 | 1803 |
pat | HBB | chr11:4366798-6237565 | 1870.8 | 1655 | |
F03 | mat | HBB | chr11:4249238-5884595 | 1635.4 | 1716 |
pat | HBB | chr11:4346064-6121271 | 1775.2 | 1972 | |
F04 | mat | HBB | chr11:4587676-6243982 | 1656.3 | 2308 |
pat | HBB | chr11:4905140-6216304 | 1311.2 | 1644 | |
F05 | mat | HBB | chr11:5192535-5900085 | 707.6 | 955 |
pat | HBB | chr11:4249095-5450493 | 1201.4 | 1359 | |
F06 | mat | HBB | chr11:4852009-5555972 | 704.0 | 741 |
pat | HBB | chr11:5196669-6082903 | 886.2 | 1541 | |
F07 | mat | HBB | chr11:4697080-6239344 | 1542.3 | 1810 |
pat | HBB | chr11:4306665-6246051 | 1939.4 | 2043 | |
F08 | mat | HBB | chr11:4936613-6116142 | 1179.5 | 1544 |
pat | HBB | chr11:4249126-5771915 | 1522.8 | 1369 | |
F09 | mat | HBB | chr11:4436676-6239344 | 1802.7 | 1681 |
pat | HBB | chr11:4249163-6090372 | 1841.2 | 2247 | |
F10 | mat | HBB | chr11:4249271-6237565 | 1988.3 | 1666 |
pat | HBB | chr11:4249031-6037803 | 1788.8 | 1733 | |
F11 | mat | HBB | chr11:4345701-5647166 | 1301.5 | 1202 |
pat | HBB | chr11:4389404-5719251 | 1329.8 | 1450 | |
F12 | mat | HBB | chr11:4249095-6239344 | 1990.2 | 2301 |
pat | HBB | chr11:4387760-6121428 | 1733.7 | 2418 | |
F13 | mat | HBA | chr16:60185-679412 | 619.2 | 284 |
pat | HBA | chr16:60185-1225628 | 1165.4 | 937 | |
F14 | mat | HBA | chr16:186950-1216997 | 1030.0 | 606 |
pat | HBA | chr16:132246-612607 | 480.4 | 251 | |
F15 | mat | HBA | chr16:94080-1225184 | 1131.1 | 899 |
pat | HBA | chr16:74039-1197612 | 1123.6 | 687 | |
F16 | mat | HBA | chr16:79811-1223722 | 1143.9 | 883 |
pat | HBA | chr16:60185-460830 | 400.6 | 339 | |
F17 | mat | HBA | chr16:60185-1192620 | 1132.4 | 1045 |
pat | HBA | chr16:60291-1225184 | 1164.9 | 1010 | |
F18 | mat | MMACHC | chr1: 44966837-46952164 | 1985.3 | 1599 |
pat | MMACHC | chr1: 44972309-46972958 | 2000.6 | 926 | |
F19 | mat | MMACHC | chr1: 45513754-46973454 | 1459.7 | 440 |
pat | MMACHC | chr1: 44979498-46975877 | 1996.3 | 831 | |
F20 | mat | MMACHC | chr1: 45767431-46206444 | 439.0 | 119 |
pat | MMACHC | chr1: 45386861-46503217 | 1116.3 | 247 | |
F21 | mat | MMACHC | chr1: 45765523-46975294 | 1209.8 | 457 |
pat | MMACHC | chr1:44967323-46975877 | 2008.6 | 812 | |
F22 | mat | MMACHC | chr1:45762749-46722939 | 960.2 | 445 |
pat | MMACHC | chr1:45701916-46097939 | 396.0 | 161 | |
F23 | mat | MMACHC | chr1:45738336-46975450 | 1237.1 | 729 |
pat | MMACHC | chr1:44967431-46975877 | 2008.4 | 1228 | |
F24 | mat | MMACHC | chr1:45947353-46095125 | 147.8 | 27 |
pat | MMACHC | chr1:45775550-46605728 | 830.2 | 609 | |
F25 | mat | MMACHC | chr1:45765523-46053981 | 288.5 | 156 |
pat | MMACHC | chr1:45765523-45982693 | 217.2 | 41 | |
F26 | mat | MMACHC | chr1:45767431-46975877 | 1208.4 | 691 |
pat | MMACHC | chr1:45762749-46975877 | 1213.1 | 684 | |
F27 | mat | MMACHC | chr1:45683746-46645681 | 961.9 | 572 |
pat | MMACHC | chr1:45962137-45974407 | 12.3 | 3 | |
F28 | mat | MMACHC | chr1:44967323-45974520 | 1007.2 | 595 |
pat | MMACHC | chr1:44967323-46691245 | 1723.9 | 1149 | |
F29 | mat | MMACHC | chr1:45640368-46975877 | 1335.5 | 599 |
pat | MMACHC | chr1:44973546-46975877 | 2002.3 | 1185 | |
F30 | mat | MMACHC | chr1:44967825-46975877 | 2008.1 | 1082 |
pat | MMACHC | chr1:45683419-46924563 | 1241.1 | 685 | |
F31 | mat | PAH | chr12:103214192-104013534 | 799.3 | 301 |
pat | PAH | chr12:102252463-104225303 | 1972.8 | 1299 | |
F32 | mat | PAH | chr12:102241500-104309559 | 2068.1 | 1300 |
pat | PAH | chr12:102240964-104261374 | 2020.4 | 1094 | |
F33 | mat | PAH | chr12:102240964-103276441 | 1035.5 | 555 |
pat | PAH | chr12:102241500-104173880 | 1932.4 | 1048 | |
F34 | mat | PAH | chr12:102618568-104309712 | 1691.1 | 1095 |
pat | PAH | chr12:102728895-104272113 | 1543.2 | 696 | |
F35 | mat | PAH | chr12:102894838-103267467 | 372.6 | 136 |
pat | PAH | chr12:103075411-104309383 | 1234.0 | 1069 | |
F36 | mat | PAH | chr12:102248565-104275721 | 2027.2 | 1189 |
pat | PAH | chr12:103105959-103274915 | 169.0 | 106 | |
F37 | mat | PAH | chr12:102321986-103791220 | 1469.2 | 984 |
pat | PAH | chr12:102710699-104300441 | 1589.7 | 1062 | |
F38 | mat | PAH | chr12:102240964-103623855 | 1382.9 | 619 |
pat | PAH | chr12:102240964-104304705 | 2063.7 | 1246 | |
F39 | mat | PKHD1 | chr6:50968947-52950047 | 1981.1 | 1347 |
pat | PKHD1 | chr6:50982112-52905592 | 1923.5 | 985 | |
F40 | mat | GJB2 | chr13:20687773-20802900 | 115.1 | 93 |
pat | GJB2 | chr13:20676993-21122165 | 445.2 | 279 |