Table 1 Overview of virus proportion from Wuhan patients
From: Rapid screening and identification of viral pathogens in metagenomic data
Sample ID | Host % | Virus % | FastViromeExplorer + BWA (n = 3) | FastViromeExplorer (n = 3) | BWA (n = 3) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | |||
1 | 51.18 | 0.97 | 1m7s | 0m29s | 99.90 | 0 | 0m47s | 0m3s | 99.93 | 1 | 30m20s | 2m41s | 100.00 | 0 |
2 | 29.29 | 58.83 | 1m42s | 0m19s | 99.89 | 2 | 0m28s | 0m4s | 100.00 | 1 | 1m53s | 0m28s | 99.92 | 2 |
3 | 25.68 | 60.98 | 2m12s | 0m6s | 99.98 | 1 | 0m45s | 0m5s | 100.00 | 0 | 2m35s | 0m7s | 100.00 | 0 |
4 | 12.22 | 3.4 | 0m34s | 0m9s | 98.94 | 35 | 0m15s | 0m1s | 99.31 | 1 | 0m56s | 0m5s | 98.98 | 35 |
5 | 0.8 | 0.36 | 0m10s | 0m1s | 56.92 | 25 | 0m18s | 0m2s | 66.82 | 0 | 4m39s | 0m21s | 59.37 | 25 |
6 | 43.42 | 8.82 | 0m32s | 0m10s | 87.91 | 48 | 0m38s | 0m3s | 93.74 | 982 | 1m20s | 0m18s | 87,93 | 48 |
7 | 46.94 | 20.15 | 2m17s | 0m18s | 99.98 | 0 | 2m7s | 0m5s | 100.00 | 2 | 15m52s | 2m36s | 100.00 | 2 |
8 | 10.42 | 9.56 | 0m47s | 0m12s | 92.44 | 41 | 0m52s | 0m4s | 99.48 | 287 | 17m26s | 2m51s | 99.36 | 40 |
9 | 19.01 | 14.65 | 8m51s | 0m54s | 99.98 | 3 | 6m25s | 1m7s | 100.00 | 1 | 26m55s | 3m6s | 99.98 | 2 |
10 | 2.02 | 86.87 | 71m23s | 7m19s | 100.00 | 0 | 43m33s | 1m29s | 100.00 | 0 | 91m52s | 10m44s | 100.00 | 0 |