Table 2 Overview of virus MERS NC_019843.3 in MERS infected MRC5 cells
From: Rapid screening and identification of viral pathogens in metagenomic data
Sample ID | Host % | Virus % | FastViromeExplorer + BWA (n = 3) | FastViromeExplorer (n = 3) | BWA (n = 3) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | |||
11 | 32.68 | 65.73 | 111m12s | 3m15s | 100.00 | 5 | 16m15s | 2m7s | 100.00 | 4 | 166m38s | 9m0s | 100.00 | 6 |
12 | 40.07 | 58.10 | 121m17s | 17m3s | 99.90 | 5 | 16m16s | 2m50s | 100.00 | 5 | 163m10s | 17m3s | 100.00 | 5 |
13 | 38.45 | 59.85 | 144m15s | 12m53s | 100.00 | 5 | 25m36s | 3m38s | 100.00 | 4 | 228m17s | 17m14s | 100.00 | 5 |
14 | 40.14 | 57.96 | 123m19s | 16m10s | 98.86 | 5 | 25m12s | 4m13s | 100.00 | 4 | 234m6s | 13m53s | 100.00 | 5 |
15 | 32.23 | 66.20 | 193m33s | 7m25s | 100.00 | 4 | 31m40s | 4m1s | 100.00 | 4 | 540m25s | 54m25s | 100.00 | 5 |