Table 5 Overview of SARS-CoV-2 virus in pangolins’ lung samples
From: Rapid screening and identification of viral pathogens in metagenomic data
Sample ID | Host % | Virus % | FastViromeExplorer + BWA (n = 3) | FastViromeExplorer (n = 3) | BWA (n = 3) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Time | cov. % | #. SNV | Time | cov. % | #. SNV | Time | cov. % | #. SNV | |||
Lung07 | 1.32 | 0.62 | 1m21s | 7 | 43 | 0m22s | 24.88 | 469 | 56m48s | 8.86 | 41 |
Lung08 | 2.05 | 0.65 | 0m43s | 11.53 | 37 | 0m19s | 51.58 | 743 | 25m46s | 13.87 | 37 |