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Fig. 3 | BMC Medical Genomics

Fig. 3

From: Establishing analytical validity of BeadChip array genotype data by comparison to whole-genome sequence and standard benchmark datasets

Fig. 3

Three-dimensional scatterplot showing reproducibility of GSA call rate measured in three replicates for each Coriell sample (pairwise analysis of triplicate data). The data is plotted as correlation across triplicates for all measured GSA genotypes for a given DNA sample. Note that most samples had concordance greater than 0.999 between replicates suggesting high reproducibility. A few samples had off-diagonal points, i.e., those with poor call rates or reproducibility. The color rainbow gradient is from blue (< 0.996) to dark red (1.00)

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