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Table 3 Summary of GSA triplicate data and average number of genotypes detected in all triplicate samples

From: Establishing analytical validity of BeadChip array genotype data by comparison to whole-genome sequence and standard benchmark datasets

  Replicate 1 Replicate 2 Replicate 3 All data
Total genotypes called 609,852 (± 1625) 609,723 (± 2548) 609,648 (± 3501) 609,741 (± 2668)
Missing genotypes 919 (± 1625) 1048 (± 2548) 1122 (± 3501) 1030 (± 2668)
Autosomal genotypes 599,666 (± 1619) 599,538 (± 2538) 599,467 (± 3459) 599,557 (± 2645)
Autosomal heterozygous genotypes 103,328 (± 4061) 103,221 (± 4063) 103,309 (± 4087) 103,286 (± 4066)
Autosomal homozygous alternate genotypesª 60,652 (± 3081) 60,643 (± 3098) 60,623 (± 3081) 60,639 (± 3083)
  1. ªWe define the alternate genotype as a genotype different from homozygous reference sequence genotype