Skip to main content

Table 3 Summary of GSA triplicate data and average number of genotypes detected in all triplicate samples

From: Establishing analytical validity of BeadChip array genotype data by comparison to whole-genome sequence and standard benchmark datasets

 

Replicate 1

Replicate 2

Replicate 3

All data

Total genotypes called

609,852 (± 1625)

609,723 (± 2548)

609,648 (± 3501)

609,741 (± 2668)

Missing genotypes

919 (± 1625)

1048 (± 2548)

1122 (± 3501)

1030 (± 2668)

Autosomal genotypes

599,666 (± 1619)

599,538 (± 2538)

599,467 (± 3459)

599,557 (± 2645)

Autosomal heterozygous genotypes

103,328 (± 4061)

103,221 (± 4063)

103,309 (± 4087)

103,286 (± 4066)

Autosomal homozygous alternate genotypesª

60,652 (± 3081)

60,643 (± 3098)

60,623 (± 3081)

60,639 (± 3083)

  1. ªWe define the alternate genotype as a genotype different from homozygous reference sequence genotype