Nucleotide variant type assay subsets | All GSA data | GSA pass manifest clusterfile QC | GSA pass manifest QC and present in 1KG Phase 3 |
---|---|---|---|
Single nucleotide variants (SNVs) | 656,601 | 606,524 | 594,230 |
Multi-allelic variants (MAVs) | 616 | 526 | 3* |
Insertions | 1110 | 1044 | 36 |
Deletions | 2799 | 2677 | 95 |
Total | 661,126 | 610,771 | 594,361 |