Table 6 Distribution of GSA (reference (Ref) to alternate (Alt) allele) SNV assays present in the 1KG Phase 3 data versus number of assays passing QC
| Â | Ref\Alt | Purine | Purine | Pyrimidine | Pyrimidine |
|---|---|---|---|---|---|
A | G | C | T | ||
Purine | A | – | 101,994/111,493 (91%) | 25,107/28,214 (89%) | 1368/2065 (66%) |
Purine | G | 136,350/149,635 (91%) | – | 2404/3280 (73%) | 29,629/33,115 (89%) |
Pyrimidine | C | 30,130/33,566 (90%) | 2339/3216 (73%) | – | 136,392/149,801 (91%) |
Pyrimidine | T | 1362/2074 (66%) | 24,983/28,133 (89%) | 102,172/112,009 (91%) | – |